Variant report

Variant	rs16897903
Chromosome Location	chr8:124048170-124048171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:123791523..123793815-chr8:124047850..124051183,3	MCF-7	breast:
2	chr8:124045660..124048349-chr8:124165021..124167083,2	K562	blood:
3	chr8:124035444..124039063-chr8:124047842..124050239,3	MCF-7	breast:
4	chr8:124035080..124038164-chr8:124047166..124050803,4	MCF-7	breast:
5	chr8:124047069..124048910-chr8:124178718..124181418,2	K562	blood:
6	chr8:123791583..123793534-chr8:124046268..124048841,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272384	Chromatin interaction
ENSG00000272043	Chromatin interaction
ENSG00000136986	Chromatin interaction
ENSG00000178764	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11991436	1.00[MEX][hapmap]
rs11992098	1.00[MEX][hapmap]
rs16897571	1.00[MEX][hapmap]
rs16897576	1.00[MEX][hapmap]
rs16897633	1.00[MEX][hapmap]
rs16897891	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs16897940	1.00[MEX][hapmap]
rs16898127	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv429939	chr8:124027819-124180819	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124026000-124053600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:124031400-124053400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:124032200-124051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:124032400-124051600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:124032400-124053800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:124034600-124049800	Weak transcription	HMEC	breast
7	chr8:124034600-124050400	Weak transcription	Placenta	Placenta
8	chr8:124034800-124049000	Weak transcription	HepG2	liver
9	chr8:124035000-124052800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:124035200-124049200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:124035200-124049600	Weak transcription	Fetal Intestine Large	intestine
12	chr8:124036800-124049600	Weak transcription	Fetal Intestine Small	intestine
13	chr8:124037800-124049000	Weak transcription	Colonic Mucosa	Colon
14	chr8:124038000-124049600	Weak transcription	Thymus	Thymus
15	chr8:124038000-124050000	Weak transcription	Fetal Stomach	stomach
16	chr8:124038200-124049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:124038200-124049600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:124038200-124053600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:124039000-124048800	Weak transcription	NHLF	lung
20	chr8:124039200-124049000	Weak transcription	Hela-S3	cervix
21	chr8:124039200-124049600	Weak transcription	NHDF-Ad	bronchial
22	chr8:124041400-124049000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:124041800-124049400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr8:124042000-124049000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr8:124042000-124049800	Weak transcription	NHEK	skin
26	chr8:124042800-124049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:124043200-124052600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:124043400-124053200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr8:124043600-124053400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr8:124044200-124048600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr8:124044200-124049000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr8:124044200-124052800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:124044800-124049800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:124045000-124048400	Enhancers	Psoas Muscle	Psoas
35	chr8:124045600-124049400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr8:124045600-124053000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr8:124045800-124048200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:124045800-124050400	Enhancers	Primary B cells from peripheral blood	blood
39	chr8:124046000-124048400	Enhancers	Adipose Nuclei	Adipose
40	chr8:124046000-124048400	Enhancers	Brain Substantia Nigra	brain
41	chr8:124046000-124048600	Enhancers	Brain Anterior Caudate	brain
42	chr8:124046000-124048600	Enhancers	HSMM	muscle
43	chr8:124046000-124049000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr8:124046000-124049000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr8:124046000-124049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:124046000-124049400	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr8:124046000-124049600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:124046000-124049600	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr8:124046000-124049600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr8:124046200-124048600	Enhancers	Brain Angular Gyrus	brain

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