Variant report

Variant	rs16897576
Chromosome Location	chr8:123879447-123879448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:123792963..123797614-chr8:123877493..123882982,5	MCF-7	breast:
2	chr8:123878434..123880143-chr8:123880293..123883240,2	K562	blood:
3	chr8:123851985..123854064-chr8:123878453..123881226,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272043	Chromatin interaction
ENSG00000272384	Chromatin interaction
ENSG00000178764	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10505426	1.00[EUR][1000 genomes]
rs11990273	1.00[EUR][1000 genomes]
rs16897554	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16897571	1.00[MEX][hapmap]
rs16897633	1.00[MEX][hapmap]
rs16897891	1.00[MEX][hapmap]
rs16897903	1.00[MEX][hapmap]
rs1992669	1.00[EUR][1000 genomes]
rs60296517	1.00[EUR][1000 genomes]
rs6988421	1.00[EUR][1000 genomes]
rs6993388	1.00[EUR][1000 genomes]
rs7008874	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73331728	1.00[EUR][1000 genomes]
rs73331733	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:123861000-123888600	Weak transcription	GM12878-XiMat	blood
2	chr8:123867600-123898000	Weak transcription	Small Intestine	intestine
3	chr8:123869000-123888600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:123870000-123880200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:123870400-123881000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:123870400-123894400	Weak transcription	Stomach Mucosa	stomach
7	chr8:123870600-123885000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:123870600-123900200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:123871600-123901600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr8:123871800-123881200	Weak transcription	Gastric	stomach
11	chr8:123871800-123899600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:123874200-123881000	Weak transcription	Colonic Mucosa	Colon
13	chr8:123874200-123889000	Weak transcription	Fetal Kidney	kidney
14	chr8:123874400-123879800	Strong transcription	Fetal Intestine Small	intestine
15	chr8:123874400-123881800	Strong transcription	Liver	Liver
16	chr8:123874400-123889000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:123874400-123894000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:123874600-123882000	Strong transcription	Spleen	Spleen
19	chr8:123874800-123886200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:123874800-123890800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr8:123874800-123893600	Strong transcription	Stomach Smooth Muscle	stomach
22	chr8:123875200-123881200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:123875200-123885000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:123875600-123884400	Strong transcription	Lung	lung
25	chr8:123875600-123890600	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:123875800-123882200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr8:123875800-123883000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr8:123875800-123891000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:123876000-123882600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr8:123876000-123883000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:123876000-123884400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:123876000-123889800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:123876000-123893000	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr8:123876000-123894400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:123876200-123879800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr8:123876200-123880000	Weak transcription	HMEC	breast
37	chr8:123876200-123880000	Weak transcription	NHEK	skin
38	chr8:123876200-123884800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:123876200-123885000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:123876200-123886800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr8:123876200-123892800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr8:123876400-123883400	Strong transcription	Fetal Intestine Large	intestine
43	chr8:123876400-123884200	Weak transcription	Fetal Brain Male	brain
44	chr8:123876400-123886200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:123876400-123899200	Strong transcription	Primary T cells from cord blood	blood
46	chr8:123876400-123900200	Weak transcription	Right Atrium	heart
47	chr8:123876600-123880000	Weak transcription	Fetal Heart	heart
48	chr8:123876600-123880400	Weak transcription	Fetal Lung	lung
49	chr8:123876600-123881200	Weak transcription	HSMMtube	muscle
50	chr8:123876600-123884200	Weak transcription	Brain Germinal Matrix	brain

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