Variant report

Variant	rs16897571
Chromosome Location	chr8:123875725-123875726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16897576	1.00[MEX][hapmap]
rs16897633	1.00[MEX][hapmap]
rs16897891	1.00[MEX][hapmap]
rs16897903	1.00[MEX][hapmap]
rs28637302	0.90[EUR][1000 genomes]
rs58533610	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:123837400-123876000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:123861000-123888600	Weak transcription	GM12878-XiMat	blood
3	chr8:123864600-123876400	Weak transcription	Fetal Intestine Large	intestine
4	chr8:123866600-123875800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:123867600-123898000	Weak transcription	Small Intestine	intestine
6	chr8:123868600-123876400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:123869000-123876000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:123869000-123888600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:123869200-123878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:123870000-123880200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:123870400-123876000	Weak transcription	Aorta	Aorta
12	chr8:123870400-123881000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:123870400-123894400	Weak transcription	Stomach Mucosa	stomach
14	chr8:123870600-123876400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:123870600-123885000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:123870600-123900200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr8:123870800-123875800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:123871600-123878200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:123871600-123901600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr8:123871800-123875800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:123871800-123876000	Weak transcription	Adipose Nuclei	Adipose
22	chr8:123871800-123876200	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:123871800-123881200	Weak transcription	Gastric	stomach
24	chr8:123871800-123899600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:123872000-123876000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:123872000-123878800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:123872800-123877000	Enhancers	Brain Hippocampus Middle	brain
28	chr8:123872800-123877400	Enhancers	Fetal Thymus	thymus
29	chr8:123873000-123875800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr8:123873000-123876400	Enhancers	Fetal Muscle Trunk	muscle
31	chr8:123873000-123876400	Enhancers	Fetal Muscle Leg	muscle
32	chr8:123873200-123876600	Enhancers	Fetal Heart	heart
33	chr8:123873200-123877000	Enhancers	Left Ventricle	heart
34	chr8:123873400-123875800	Strong transcription	HepG2	liver
35	chr8:123873400-123876400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr8:123873400-123876400	Enhancers	Brain Cingulate Gyrus	brain
37	chr8:123873400-123877000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr8:123873400-123877200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr8:123873400-123877400	Enhancers	Brain Anterior Caudate	brain
40	chr8:123873600-123876200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:123873600-123876200	Enhancers	HMEC	breast
42	chr8:123873800-123875800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr8:123873800-123876000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:123873800-123876000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:123873800-123876800	Enhancers	Esophagus	oesophagus
46	chr8:123873800-123877000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:123873800-123878200	Weak transcription	HSMM	muscle
48	chr8:123873800-123878400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:123874000-123875800	Weak transcription	Fetal Lung	lung
50	chr8:123874000-123876000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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