Variant report

Variant	rs16898212
Chromosome Location	chr8:86985003-86985004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86373773..86378088-chr8:86980935..86988141,12	MCF-7	breast:
2	chr8:86362621..86364573-chr8:86984978..86986328,33	MCF-7	breast:
3	chr8:86852235..86854715-chr8:86982807..86985769,2	MCF-7	breast:
4	chr8:86982282..86983795-chr8:86983943..86985533,2	MCF-7	breast:
5	chr8:86848347..86850172-chr8:86983643..86985301,2	MCF-7	breast:
6	chr8:86364193..86367420-chr8:86983302..86985481,3	MCF-7	breast:
7	chr8:86879619..86881182-chr8:86983362..86985609,2	K562	blood:

Variant related genes	Relation type
ENSG00000104267	Chromatin interaction
ENSG00000253549	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11987022	0.86[EUR][1000 genomes]
rs11994093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1426569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1484659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16899237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16905281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16915346	1.00[ASN][1000 genomes]
rs17596760	1.00[CEU][hapmap]
rs1863578	1.00[ASN][1000 genomes]
rs1946380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34800222	0.86[EUR][1000 genomes]
rs4378008	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4563937	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56381325	0.86[EUR][1000 genomes]
rs57029033	0.86[EUR][1000 genomes]
rs62512075	1.00[ASN][1000 genomes]
rs62512076	1.00[ASN][1000 genomes]
rs62512078	1.00[ASN][1000 genomes]
rs62512107	0.86[EUR][1000 genomes]
rs62512108	0.82[EUR][1000 genomes]
rs62512109	0.86[EUR][1000 genomes]
rs62512117	0.86[EUR][1000 genomes]
rs62512118	0.86[EUR][1000 genomes]
rs62512119	0.86[EUR][1000 genomes]
rs62512120	0.86[EUR][1000 genomes]
rs62512121	0.86[EUR][1000 genomes]
rs62512122	0.86[EUR][1000 genomes]
rs6468824	0.86[EUR][1000 genomes]
rs6468869	0.86[EUR][1000 genomes]
rs6471527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6986040	0.86[EUR][1000 genomes]
rs6989561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7010788	0.86[EUR][1000 genomes]
rs7016015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7016342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7016829	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs716978	0.86[EUR][1000 genomes]
rs72684840	1.00[ASN][1000 genomes]
rs72684849	0.87[ASN][1000 genomes]
rs72684857	0.86[EUR][1000 genomes]
rs72684861	0.86[EUR][1000 genomes]
rs72684862	0.86[EUR][1000 genomes]
rs72684870	0.86[EUR][1000 genomes]
rs72684873	0.86[EUR][1000 genomes]
rs7464656	0.82[EUR][1000 genomes]
rs7824910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7827841	1.00[ASN][1000 genomes]
rs7840687	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1807498	chr8:86405478-86986703	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv1828364	chr8:86405478-86986703	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv1831268	chr8:86405478-86986703	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv1844000	chr8:86405478-86986703	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv1851686	chr8:86405478-86986703	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv427824	chr8:86405478-86986703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	esv2758162	chr8:86405478-87055053	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	esv2759624	chr8:86405478-87055053	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv482395	chr8:86766289-86986303	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv891139	chr8:86827016-87001113	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv891146	chr8:86841229-87083747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	esv2753776	chr8:86918562-87020337	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	esv1801404	chr8:86976804-87023306	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv1034721	chr8:86977250-87131151	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv982106	chr8:86983974-86987379	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86979000-86985400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:86983400-86985800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:86983600-86988800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:86983800-86985600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:86983800-86986400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:86983800-86991200	Enhancers	Brain Hippocampus Middle	brain
7	chr8:86984000-86985200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:86984200-86985800	Enhancers	Brain Substantia Nigra	brain
9	chr8:86984200-87000000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:86984400-86985400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:86984400-86985400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:86984400-86985600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr8:86984400-86986800	Weak transcription	Brain Anterior Caudate	brain
14	chr8:86984800-86985200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:86984800-86985200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:86984800-86985800	Enhancers	Liver	Liver
17	chr8:86984800-86985800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:86984800-86989400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:86985000-86985600	Enhancers	Cortex derived primary cultured neurospheres	brain

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