Variant report

Variant	rs16898668
Chromosome Location	chr8:124656137-124656138
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124655670..124657756-chr8:124660016..124662293,2	K562	blood:
2	chr8:124644904..124649137-chr8:124652807..124658443,6	MCF-7	breast:
3	chr8:124651070..124655154-chr8:124655316..124659808,4	MCF-7	breast:
4	chr8:124654411..124657402-chr8:124657666..124660616,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10505438	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs10505439	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs10956143	0.90[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap]
rs12056317	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13252050	0.83[JPT][hapmap]
rs16898635	1.00[MEX][hapmap]
rs16898685	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16898686	1.00[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs16898687	0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs16898689	0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs16898691	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4367519	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs58763139	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62518569	0.86[ASN][1000 genomes]
rs66970129	0.90[ASN][1000 genomes]
rs72711231	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72711243	0.82[ASN][1000 genomes]
rs72711245	0.82[ASN][1000 genomes]
rs72711246	0.82[ASN][1000 genomes]
rs72711249	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72713110	0.80[ASN][1000 genomes]
rs9642868	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643183	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1844966	chr8:124654332-124660447	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124652200-124657800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:124652200-124658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:124653400-124656400	Weak transcription	HSMMtube	muscle
4	chr8:124653600-124656200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:124653600-124656800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:124655000-124657800	Enhancers	Left Ventricle	heart
7	chr8:124655000-124660000	Enhancers	Ovary	ovary
8	chr8:124655600-124656400	Enhancers	Psoas Muscle	Psoas
9	chr8:124655600-124657400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:124655600-124658800	Enhancers	Right Ventricle	heart
11	chr8:124655800-124656200	Bivalent Enhancer	Fetal Intestine Small	intestine
12	chr8:124655800-124656200	Enhancers	Pancreas	Pancrea
13	chr8:124655800-124656400	Enhancers	Right Atrium	heart
14	chr8:124655800-124656600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
15	chr8:124655800-124656800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:124655800-124656800	Enhancers	Fetal Intestine Large	intestine
17	chr8:124655800-124656800	Enhancers	Rectal Smooth Muscle	rectum
18	chr8:124655800-124657000	Enhancers	Placenta	Placenta
19	chr8:124655800-124657000	Enhancers	Fetal Stomach	stomach
20	chr8:124655800-124657200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr8:124655800-124657400	Enhancers	Osteobl	bone
22	chr8:124655800-124658000	Enhancers	Fetal Muscle Trunk	muscle
23	chr8:124655800-124658200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:124655800-124659000	Enhancers	Stomach Smooth Muscle	stomach
25	chr8:124656000-124656200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:124656000-124656200	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr8:124656000-124656200	Enhancers	Brain Anterior Caudate	brain
28	chr8:124656000-124656200	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr8:124656000-124656200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
30	chr8:124656000-124656200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
31	chr8:124656000-124656400	Flanking Active TSS	Fetal Heart	heart
32	chr8:124656000-124656400	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr8:124656000-124656600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
34	chr8:124656000-124656600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr8:124656000-124656800	Enhancers	Aorta	Aorta
36	chr8:124656000-124656800	Enhancers	Brain Substantia Nigra	brain
37	chr8:124656000-124656800	Enhancers	A549	lung
38	chr8:124656000-124656800	Enhancers	HSMM	muscle
39	chr8:124656000-124657000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:124656000-124657000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:124656000-124657000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:124656000-124657000	Enhancers	Brain Hippocampus Middle	brain
43	chr8:124656000-124657000	Enhancers	Fetal Lung	lung
44	chr8:124656000-124657000	Enhancers	NHDF-Ad	bronchial
45	chr8:124656000-124657200	Enhancers	Brain Angular Gyrus	brain
46	chr8:124656000-124657200	Enhancers	NH-A	brain

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