Variant report

Variant	rs16898743
Chromosome Location	chr8:124705611-124705612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124705081..124707705-chr8:124777857..124780105,2	MCF-7	breast:
2	chr8:124497449..124501103-chr8:124705161..124707285,5	MCF-7	breast:
3	chr8:124510177..124512416-chr8:124704489..124706566,2	MCF-7	breast:
4	chr8:124500072..124500754-chr8:124705569..124706580,3	MCF-7	breast:
5	chr8:124497637..124499570-chr8:124705281..124707002,40	MCF-7	breast:
6	chr8:124674966..124677669-chr8:124704647..124706640,2	MCF-7	breast:
7	chr8:124704299..124706961-chr8:124708389..124710569,2	MCF-7	breast:
8	chr8:124572458..124577349-chr8:124702422..124707183,6	MCF-7	breast:
9	chr8:124475204..124475707-chr8:124705564..124706170,2	K562	blood:
10	chr8:124643258..124644911-chr8:124705316..124706852,2	MCF-7	breast:
11	chr8:124699483..124702834-chr8:124703972..124707489,4	MCF-7	breast:

No data

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10505441	1.00[EUR][1000 genomes]
rs11996113	1.00[EUR][1000 genomes]
rs11997211	1.00[EUR][1000 genomes]
rs16898756	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16898765	1.00[EUR][1000 genomes]
rs16898849	1.00[EUR][1000 genomes]
rs1975114	1.00[EUR][1000 genomes]
rs34792899	1.00[EUR][1000 genomes]
rs4513954	1.00[EUR][1000 genomes]
rs57418226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58056715	1.00[EUR][1000 genomes]
rs58826471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58870794	1.00[EUR][1000 genomes]
rs6981655	1.00[EUR][1000 genomes]
rs6986577	1.00[EUR][1000 genomes]
rs6986749	1.00[EUR][1000 genomes]
rs6986773	1.00[EUR][1000 genomes]
rs7004529	1.00[EUR][1000 genomes]
rs7004798	1.00[EUR][1000 genomes]
rs7008452	1.00[EUR][1000 genomes]
rs73324246	1.00[EUR][1000 genomes]
rs7813635	1.00[EUR][1000 genomes]
rs7819852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833145	1.00[EUR][1000 genomes]
rs7833197	1.00[EUR][1000 genomes]
rs7840250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9694473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124693200-124706800	Enhancers	Fetal Stomach	stomach
2	chr8:124694200-124707400	Enhancers	Colon Smooth Muscle	Colon
3	chr8:124696200-124707400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:124696400-124707400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:124697800-124706800	Enhancers	Fetal Heart	heart
6	chr8:124698800-124706600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:124698800-124706800	Enhancers	HMEC	breast
8	chr8:124698800-124707200	Enhancers	HSMMtube	muscle
9	chr8:124701200-124707600	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:124701600-124706200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:124701600-124706400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:124701600-124707200	Enhancers	HepG2	liver
13	chr8:124701600-124707400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:124701800-124706600	Enhancers	Brain Hippocampus Middle	brain
15	chr8:124702000-124706600	Enhancers	Fetal Lung	lung
16	chr8:124702000-124706600	Enhancers	HSMM	muscle
17	chr8:124702000-124706600	Enhancers	NH-A	brain
18	chr8:124702000-124706800	Enhancers	NHEK	skin
19	chr8:124702200-124706000	Enhancers	NHDF-Ad	bronchial
20	chr8:124702200-124706600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:124702200-124706600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:124702200-124706600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr8:124702200-124707200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:124702200-124708200	Genic enhancers	Fetal Intestine Small	intestine
25	chr8:124702400-124706600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:124702400-124706800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:124702400-124706800	Enhancers	Osteobl	bone
28	chr8:124702600-124706800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:124703000-124706200	Enhancers	Fetal Muscle Leg	muscle
30	chr8:124703200-124706400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:124703200-124706600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr8:124703200-124706800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr8:124703200-124708600	Weak transcription	Right Atrium	heart
34	chr8:124703200-124714000	Weak transcription	Small Intestine	intestine
35	chr8:124703400-124708000	Enhancers	Brain Substantia Nigra	brain
36	chr8:124703400-124712200	Weak transcription	Aorta	Aorta
37	chr8:124703400-124712600	Weak transcription	Psoas Muscle	Psoas
38	chr8:124703600-124706200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:124704200-124706800	Enhancers	HUVEC	blood vessel
40	chr8:124704400-124706600	Enhancers	Brain Cingulate Gyrus	brain
41	chr8:124704400-124706800	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr8:124704400-124707000	Genic enhancers	Duodenum Mucosa	Duodenum
43	chr8:124704600-124706000	Weak transcription	Stomach Mucosa	stomach
44	chr8:124704600-124725400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr8:124704800-124705800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:124704800-124706200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:124705000-124706000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr8:124705000-124706400	Enhancers	Brain Anterior Caudate	brain
49	chr8:124705000-124706600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr8:124705000-124706800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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