Variant report

Variant	rs7819852
Chromosome Location	chr8:124709098-124709099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124474931..124475567-chr8:124708452..124709447,2	MCF-7	breast:
2	chr8:124708726..124710811-chr8:124713017..124715572,2	K562	blood:
3	chr8:124706375..124708121-chr8:124708408..124710117,2	MCF-7	breast:
4	chr8:124704299..124706961-chr8:124708389..124710569,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10505441	1.00[EUR][1000 genomes]
rs11996113	1.00[EUR][1000 genomes]
rs11997211	1.00[EUR][1000 genomes]
rs16898743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16898756	1.00[EUR][1000 genomes]
rs16898765	1.00[EUR][1000 genomes]
rs16898849	1.00[EUR][1000 genomes]
rs1975114	1.00[EUR][1000 genomes]
rs34792899	1.00[EUR][1000 genomes]
rs4513954	1.00[EUR][1000 genomes]
rs57418226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58056715	1.00[EUR][1000 genomes]
rs58826471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58870794	1.00[EUR][1000 genomes]
rs6981655	1.00[EUR][1000 genomes]
rs6986577	1.00[EUR][1000 genomes]
rs6986749	1.00[EUR][1000 genomes]
rs6986773	1.00[EUR][1000 genomes]
rs7004529	1.00[EUR][1000 genomes]
rs7004798	1.00[EUR][1000 genomes]
rs7008452	1.00[EUR][1000 genomes]
rs73324246	1.00[EUR][1000 genomes]
rs7813635	1.00[EUR][1000 genomes]
rs7820119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833145	1.00[EUR][1000 genomes]
rs7833197	1.00[EUR][1000 genomes]
rs7840250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9694473	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124703200-124714000	Weak transcription	Small Intestine	intestine
2	chr8:124703400-124712200	Weak transcription	Aorta	Aorta
3	chr8:124703400-124712600	Weak transcription	Psoas Muscle	Psoas
4	chr8:124704600-124725400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:124705600-124709400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:124705800-124709400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:124706600-124710600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:124706600-124710800	Weak transcription	NH-A	brain
9	chr8:124706600-124715000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:124706800-124709600	Weak transcription	Fetal Heart	heart
11	chr8:124706800-124709800	Weak transcription	Fetal Stomach	stomach
12	chr8:124706800-124710600	Weak transcription	NHEK	skin
13	chr8:124706800-124710800	Weak transcription	Osteobl	bone
14	chr8:124706800-124711200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:124707000-124709400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:124707000-124715200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr8:124707000-124727000	Strong transcription	Fetal Intestine Large	intestine
18	chr8:124707200-124709400	Weak transcription	HSMMtube	muscle
19	chr8:124707400-124709600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:124707400-124709800	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:124707400-124712200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:124707400-124714800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:124707600-124712600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:124708200-124709600	Strong transcription	Fetal Intestine Small	intestine
25	chr8:124708800-124711000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:124708800-124711400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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