Variant report

Variant	rs16898896
Chromosome Location	chr6:166780721-166780722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166756008..166757539-chr6:166779896..166782312,2	MCF-7	breast:
2	chr6:166780289..166781935-chr6:166782190..166784893,2	K562	blood:
3	chr6:166744531..166747958-chr6:166778201..166781775,3	K562	blood:

Variant related genes	Relation type
ENSG00000060762	Chromatin interaction
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6907812	1.00[AMR][1000 genomes]
rs6922344	1.00[AMR][1000 genomes]
rs6941228	1.00[AMR][1000 genomes]
rs7740506	1.00[MEX][hapmap]
rs979563	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv1797072	chr6:166766142-166782143	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166773200-166794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:166773400-166790000	Weak transcription	Fetal Brain Male	brain
3	chr6:166774400-166790600	Weak transcription	Psoas Muscle	Psoas
4	chr6:166774800-166783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:166774800-166784000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:166774800-166787200	Weak transcription	Esophagus	oesophagus
7	chr6:166774800-166795000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:166775000-166793800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:166775200-166788400	Weak transcription	HMEC	breast
10	chr6:166775400-166785400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:166775400-166787000	Weak transcription	Fetal Kidney	kidney
12	chr6:166775800-166794800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:166776000-166781200	Strong transcription	HepG2	liver
14	chr6:166776200-166780800	Strong transcription	Primary T cells from cord blood	blood
15	chr6:166776200-166782600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:166776200-166782600	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr6:166776200-166782600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:166776200-166784600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:166776400-166780800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:166776400-166781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:166776600-166782600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:166777400-166780800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:166777400-166795400	Weak transcription	Gastric	stomach
24	chr6:166777800-166788400	Weak transcription	NHEK	skin
25	chr6:166778000-166780800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:166778000-166781000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:166778200-166781000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:166778200-166790600	Weak transcription	Right Ventricle	heart
29	chr6:166778200-166790800	Weak transcription	Fetal Brain Female	brain
30	chr6:166778200-166792800	Weak transcription	Aorta	Aorta
31	chr6:166778200-166794600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr6:166778200-166795000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:166778400-166784000	Weak transcription	Spleen	Spleen
34	chr6:166778400-166786600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:166778400-166790600	Weak transcription	Pancreas	Pancrea
36	chr6:166778400-166792600	Weak transcription	Lung	lung
37	chr6:166778400-166794600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:166778400-166794600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:166778400-166794600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:166778400-166794800	Weak transcription	Fetal Stomach	stomach
41	chr6:166778400-166795000	Weak transcription	Colonic Mucosa	Colon
42	chr6:166778600-166782000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:166778600-166794600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:166778600-166794600	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:166778800-166781000	Enhancers	Fetal Heart	heart
46	chr6:166778800-166785000	Weak transcription	Placenta	Placenta
47	chr6:166779000-166782000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:166779000-166783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:166779200-166788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:166779200-166793400	Weak transcription	K562	blood

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