Variant report

Variant	rs7740506
Chromosome Location	chr6:166748123-166748124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:166746252-166749844	GM12891	blood:	n/a	n/a
2	POLR2A	chr6:166747895-166748701	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:166746318-166748671	HL-60	blood:	n/a	n/a
4	POLR2A	chr6:166747027-166748876	GM12891	blood:	n/a	n/a
5	POLR2A	chr6:166746571-166749863	GM12892	blood:	n/a	n/a
6	POLR2A	chr6:166747624-166748161	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:166742700-166754624	K562	blood:	n/a	n/a
8	POLR2A	chr6:166746147-166749873	GM12891	blood:	n/a	n/a
9	POLR2A	chr6:166746274-166749904	GM12891	blood:	n/a	n/a
10	POLR2A	chr6:166746606-166748421	GM19193	blood:	n/a	n/a
11	POLR2A	chr6:166746206-166754614	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:166745653-166751514	GM12892	blood:	n/a	n/a
13	NFATC1	chr6:166746279-166748938	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:166745484-166754512	GM12892	blood:	n/a	n/a
15	POLR2A	chr6:166748107-166748374	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:166747886-166748929	K562	blood:	n/a	n/a
17	POLR2A	chr6:166745570-166751783	GM12892	blood:	n/a	n/a
18	POLR2A	chr6:166747421-166748641	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr6:166746365-166757465	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:166747939-166748409	K562	blood:	n/a	n/a
21	POLR2A	chr6:166747865-166748849	K562	blood:	n/a	n/a
22	POLR2A	chr6:166747988-166748367	GM12878	blood:	n/a	n/a
23	POLR2A	chr6:166745466-166757224	GM12878	blood:	n/a	n/a
24	NFATC1	chr6:166748037-166748947	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:166745668-166754554	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:166747539-166748890	MCF10A-Er-Src	breast:	n/a	n/a
27	POLR2A	chr6:166745300-166754633	GM12891	blood:	n/a	n/a
28	MTA3	chr6:166746591-166750124	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:166748079-166748709	HepG2	liver:	n/a	n/a
30	POLR2A	chr6:166747648-166748914	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166743072..166748840-chr6:166793771..166798653,8	K562	blood:

No data

Variant related genes	Relation type
SFT2D1	TF binding region
ENSG00000060762	Chromatin interaction
ENSG00000261420	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16898896	1.00[MEX][hapmap]
rs7739693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs979563	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166732400-166751600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:166733200-166753600	Weak transcription	Fetal Heart	heart
3	chr6:166733800-166749600	Weak transcription	Psoas Muscle	Psoas
4	chr6:166733800-166753800	Weak transcription	Hela-S3	cervix
5	chr6:166734600-166754800	Weak transcription	HUVEC	blood vessel
6	chr6:166738200-166754200	Weak transcription	NH-A	brain
7	chr6:166739400-166755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:166740000-166750800	Weak transcription	HSMMtube	muscle
9	chr6:166740400-166748600	Weak transcription	Brain Germinal Matrix	brain
10	chr6:166741400-166750000	Weak transcription	HMEC	breast
11	chr6:166741400-166752400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:166742200-166751200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:166742400-166748200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:166742600-166754000	Weak transcription	Fetal Kidney	kidney
15	chr6:166742800-166748400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:166742800-166749200	Weak transcription	NHEK	skin
17	chr6:166742800-166750000	Weak transcription	Colonic Mucosa	Colon
18	chr6:166742800-166751000	Weak transcription	HSMM	muscle
19	chr6:166743000-166749200	Weak transcription	Fetal Lung	lung
20	chr6:166743000-166749600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:166743400-166748200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:166743400-166749600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:166744400-166750600	Weak transcription	NHLF	lung
24	chr6:166744400-166752000	Weak transcription	Right Atrium	heart
25	chr6:166744400-166754800	Weak transcription	NHDF-Ad	bronchial
26	chr6:166744600-166748200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:166744600-166748200	Weak transcription	Liver	Liver
28	chr6:166744600-166748400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:166744600-166750400	Weak transcription	Ovary	ovary
30	chr6:166744800-166749400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:166745200-166749400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:166745200-166750400	Weak transcription	Stomach Mucosa	stomach
33	chr6:166745400-166754400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:166745400-166755000	Weak transcription	A549	lung
35	chr6:166745600-166748200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:166745600-166749000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:166745600-166749200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:166745800-166748800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:166745800-166749200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:166745800-166749800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:166745800-166752200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:166746000-166752000	Strong transcription	Fetal Intestine Large	intestine
43	chr6:166746200-166748200	Genic enhancers	Primary B cells from cord blood	blood
44	chr6:166746200-166748200	Genic enhancers	Adipose Nuclei	Adipose
45	chr6:166746200-166748200	Enhancers	Small Intestine	intestine
46	chr6:166746200-166748400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:166746200-166752800	Strong transcription	Fetal Intestine Small	intestine
48	chr6:166746200-166753800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:166746200-166754800	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr6:166746400-166748200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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