Variant report

Variant	rs16899188
Chromosome Location	chr8:125019158-125019159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10088862	1.00[EUR][1000 genomes]
rs10094301	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10110033	1.00[EUR][1000 genomes]
rs10111829	1.00[EUR][1000 genomes]
rs16899173	1.00[EUR][1000 genomes]
rs16899176	1.00[EUR][1000 genomes]
rs16899185	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918535	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28885416	1.00[EUR][1000 genomes]
rs4301439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480108	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563870	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817844	1.00[EUR][1000 genomes]
rs7818759	1.00[EUR][1000 genomes]
rs7827923	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834560	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834805	1.00[EUR][1000 genomes]
rs7844221	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124971800-125052000	Weak transcription	Gastric	stomach
2	chr8:124990400-125037400	Weak transcription	Fetal Stomach	stomach
3	chr8:125011400-125019200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:125016600-125019400	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:125017600-125020200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:125018400-125019400	Weak transcription	Stomach Mucosa	stomach
7	chr8:125018400-125019800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:125018400-125020800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:125018800-125019200	Enhancers	Ovary	ovary
10	chr8:125018800-125019600	Weak transcription	Fetal Heart	heart
11	chr8:125018800-125020400	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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