Variant report

Variant	rs16899189
Chromosome Location	chr8:125019937-125019938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125019491..125021099-chr8:125022699..125024731,2	K562	blood:
2	chr8:124933337..124936476-chr8:125016113..125019961,3	MCF-7	breast:
3	chr8:125015545..125020367-chr8:125025182..125030880,7	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10088862	1.00[EUR][1000 genomes]
rs10094301	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10107414	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10110033	1.00[EUR][1000 genomes]
rs10111829	1.00[EUR][1000 genomes]
rs16899144	0.88[CHB][hapmap];1.00[GIH][hapmap]
rs16899167	1.00[CEU][hapmap]
rs16899173	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16899176	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16899185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918535	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28885416	1.00[EUR][1000 genomes]
rs4301439	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480108	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563870	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817844	1.00[EUR][1000 genomes]
rs7818302	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs7818759	1.00[EUR][1000 genomes]
rs7827923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834560	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834805	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7844221	1.00[EUR][1000 genomes]
rs9297681	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124971800-125052000	Weak transcription	Gastric	stomach
2	chr8:124990400-125037400	Weak transcription	Fetal Stomach	stomach
3	chr8:125017600-125020200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:125018400-125020800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:125018800-125020400	Flanking Active TSS	K562	blood
6	chr8:125019600-125020200	Enhancers	Fetal Heart	heart
7	chr8:125019800-125020000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:125019800-125020600	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:125019800-125021400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:125019800-125021800	Weak transcription	Stomach Mucosa	stomach

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