Variant report

Variant	rs9297681
Chromosome Location	chr8:124968921-124968922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10107414	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11986147	0.86[YRI][hapmap]
rs16899167	1.00[CEU][hapmap]
rs16899173	1.00[CEU][hapmap]
rs16899176	1.00[CEU][hapmap]
rs16899185	1.00[CEU][hapmap]
rs16899189	1.00[CEU][hapmap]
rs28527318	0.86[EUR][1000 genomes]
rs28712238	1.00[EUR][1000 genomes]
rs4301439	1.00[CEU][hapmap]
rs4480108	1.00[CEU][hapmap]
rs4563870	1.00[CEU][hapmap]
rs73703688	1.00[EUR][1000 genomes]
rs7818302	1.00[CEU][hapmap]
rs7822090	1.00[EUR][1000 genomes]
rs7827923	1.00[CEU][hapmap]
rs7834805	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020971	chr8:124939571-124973679	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124962800-124969800	Weak transcription	Gastric	stomach
2	chr8:124964400-124970200	Genic enhancers	Stomach Mucosa	stomach
3	chr8:124965400-124969200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr8:124967200-124987000	Weak transcription	Fetal Stomach	stomach
5	chr8:124967800-124970200	Enhancers	A549	lung
6	chr8:124967800-124970400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:124968000-124971000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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