Variant report

Variant	rs7822090
Chromosome Location	chr8:124870210-124870211
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10107414	1.00[EUR][1000 genomes]
rs16898978	0.82[AFR][1000 genomes]
rs28527318	0.86[EUR][1000 genomes]
rs28712238	1.00[EUR][1000 genomes]
rs4260878	0.84[AFR][1000 genomes]
rs7006012	0.84[AFR][1000 genomes]
rs73703688	1.00[EUR][1000 genomes]
rs9297681	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7822090	PSMB10	trans	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124864400-124870800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:124867800-124870600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:124867800-124870600	Weak transcription	NHDF-Ad	bronchial
4	chr8:124867800-124870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:124867800-124870800	Weak transcription	Osteobl	bone
6	chr8:124868000-124870600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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