Variant report

Variant	rs4260878
Chromosome Location	chr8:124889531-124889532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11990217	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990270	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997505	0.90[AMR][1000 genomes]
rs16898978	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898994	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898996	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006211	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7822090	0.84[AFR][1000 genomes]
rs7832456	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124887800-124892200	Enhancers	NHDF-Ad	bronchial
2	chr8:124888200-124893800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:124888800-124891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:124889000-124889800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:124889000-124890000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:124889000-124890400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:124889000-124890400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:124889200-124889600	Enhancers	Hela-S3	cervix
9	chr8:124889200-124889800	Enhancers	Left Ventricle	heart
10	chr8:124889200-124890400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:124889200-124890400	Enhancers	HSMMtube	muscle
12	chr8:124889200-124891000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:124889200-124891000	Enhancers	HSMM	muscle
14	chr8:124889200-124891400	Enhancers	Adipose Nuclei	Adipose
15	chr8:124889200-124891600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:124889200-124892200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:124889400-124891000	Enhancers	Osteobl	bone
18	chr8:124889400-124891400	Enhancers	NHLF	lung
19	chr8:124889400-124894600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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