Variant report

Variant	rs7006012
Chromosome Location	chr8:124878464-124878465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11986147	1.00[MEX][hapmap]
rs11990217	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990270	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993885	1.00[YRI][hapmap]
rs11997505	0.90[AMR][1000 genomes]
rs16898978	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898994	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898996	0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16899174	1.00[MEX][hapmap]
rs4260878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4637809	1.00[MEX][hapmap]
rs7006211	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819635	1.00[MEX][hapmap]
rs7822090	0.84[AFR][1000 genomes]
rs7832456	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124877800-124878600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:124877800-124878800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr8:124878400-124878600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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