Variant report
| Variant | rs11993885 |
|---|---|
| Chromosome Location | chr8:124882855-124882856 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11990217 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11990270 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11997505 | 0.90[AMR][1000 genomes] |
| rs16898978 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16898994 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16898996 | 0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4260878 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7006012 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7006211 | 0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7822090 | 0.82[AFR][1000 genomes] |
| rs7832456 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831451 | chr8:124710946-124885148 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv6374 | chr8:124854157-124899409 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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