Variant report

Variant	rs16899525
Chromosome Location	chr8:125300894-125300895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16899596	1.00[EUR][1000 genomes]
rs2077438	1.00[EUR][1000 genomes]
rs28634212	1.00[EUR][1000 genomes]
rs4415292	1.00[EUR][1000 genomes]
rs6990083	1.00[EUR][1000 genomes]
rs73329579	1.00[EUR][1000 genomes]
rs73330395	1.00[EUR][1000 genomes]
rs73332134	1.00[EUR][1000 genomes]
rs73332141	1.00[EUR][1000 genomes]
rs73332200	1.00[EUR][1000 genomes]
rs73333903	1.00[EUR][1000 genomes]
rs73333907	1.00[EUR][1000 genomes]
rs73333978	1.00[EUR][1000 genomes]
rs73333982	1.00[EUR][1000 genomes]
rs73333983	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125295600-125306800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:125299800-125301600	Enhancers	K562	blood
3	chr8:125300600-125304400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:125300800-125301600	Enhancers	Fetal Heart	heart
5	chr8:125300800-125304400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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