Variant report

Variant	rs28634212
Chromosome Location	chr8:125290011-125290012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16899525	1.00[EUR][1000 genomes]
rs16899596	1.00[EUR][1000 genomes]
rs2077438	1.00[EUR][1000 genomes]
rs28666906	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4415292	1.00[EUR][1000 genomes]
rs55932688	0.82[AFR][1000 genomes]
rs6990083	1.00[EUR][1000 genomes]
rs73329579	1.00[EUR][1000 genomes]
rs73330395	1.00[EUR][1000 genomes]
rs73332134	1.00[EUR][1000 genomes]
rs73332141	1.00[EUR][1000 genomes]
rs73332200	1.00[EUR][1000 genomes]
rs73333903	1.00[EUR][1000 genomes]
rs73333907	1.00[EUR][1000 genomes]
rs73333978	1.00[EUR][1000 genomes]
rs73333982	1.00[EUR][1000 genomes]
rs73333983	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125284600-125290200	Weak transcription	Psoas Muscle	Psoas
2	chr8:125286200-125290200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:125287400-125292800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:125288000-125294200	Weak transcription	A549	lung
5	chr8:125289200-125292800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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