Variant report

Variant	rs16899848
Chromosome Location	chr8:125616976-125616977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125548504..125551469-chr8:125615421..125618016,2	MCF-7	breast:
2	chr8:125606519..125608601-chr8:125616738..125618798,2	MCF-7	breast:
3	chr8:125615948..125618752-chr8:125631316..125634708,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147687	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000170873	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2014895	0.93[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs3857948	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3857949	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3857950	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs3892558	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4870908	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs752492	0.93[CEU][hapmap];0.94[JPT][hapmap]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
2	chr8:125602000-125620400	Weak transcription	HMEC	breast
3	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
5	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:125605800-125617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:125606000-125617200	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:125606400-125617000	Weak transcription	Pancreas	Pancrea
9	chr8:125606600-125617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:125607400-125617000	Enhancers	Fetal Thymus	thymus
11	chr8:125607600-125617000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:125609200-125618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:125609400-125617000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:125610000-125617000	Enhancers	Primary B cells from peripheral blood	blood
15	chr8:125610000-125617600	Weak transcription	Fetal Intestine Large	intestine
16	chr8:125610600-125622800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:125611400-125617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:125611800-125617000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:125612000-125621800	Enhancers	Spleen	Spleen
20	chr8:125612800-125618600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:125613000-125617000	Weak transcription	Lung	lung
22	chr8:125613200-125617000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:125613200-125622800	Weak transcription	Gastric	stomach
24	chr8:125613800-125617000	Weak transcription	Fetal Stomach	stomach
25	chr8:125614000-125621200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr8:125614000-125628800	Enhancers	Liver	Liver
27	chr8:125614200-125617000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:125614200-125617000	Weak transcription	Fetal Intestine Small	intestine
29	chr8:125614200-125617000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:125614200-125617200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:125614200-125617200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr8:125614200-125618600	Weak transcription	Fetal Heart	heart
33	chr8:125614200-125618600	Weak transcription	HepG2	liver
34	chr8:125614200-125622400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:125614400-125627400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:125614800-125625600	Enhancers	Fetal Muscle Leg	muscle
37	chr8:125615000-125617000	Enhancers	Primary hematopoietic stem cells	blood
38	chr8:125615000-125617200	Weak transcription	NHDF-Ad	bronchial
39	chr8:125615000-125618000	Enhancers	Placenta	Placenta
40	chr8:125615200-125617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:125615200-125617200	Enhancers	Fetal Brain Male	brain
42	chr8:125615400-125617000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr8:125615400-125622800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr8:125615600-125617000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr8:125615800-125617000	Enhancers	Fetal Brain Female	brain
46	chr8:125615800-125617000	Weak transcription	Small Intestine	intestine
47	chr8:125615800-125617200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:125615800-125617200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:125615800-125617200	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr8:125615800-125618000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links