Variant report

Variant	rs3857950
Chromosome Location	chr8:125610870-125610871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125610290..125612070-chr8:125937956..125940541,2	MCF-7	breast:
2	chr8:125609071..125612556-chr8:125615058..125616813,3	K562	blood:
3	chr8:125603929..125607098-chr8:125608646..125611096,3	MCF-7	breast:
4	chr8:125609951..125612299-chr8:125732726..125735417,2	MCF-7	breast:
5	chr8:125607033..125612930-chr8:125826274..125829090,6	K562	blood:
6	chr8:125607333..125608980-chr8:125610302..125612712,2	K562	blood:
7	chr8:125609791..125612483-chr8:125613273..125615054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16899848	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs1808600	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2014895	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3857949	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs4870908	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752492	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7816697	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
2	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
3	chr8:125602000-125620400	Weak transcription	HMEC	breast
4	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:125603400-125612000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:125603400-125612600	Weak transcription	NHLF	lung
7	chr8:125603400-125612800	Weak transcription	Gastric	stomach
8	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
10	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:125603600-125611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:125603600-125612000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr8:125605000-125613800	Enhancers	Fetal Muscle Leg	muscle
14	chr8:125605000-125614200	Enhancers	Placenta	Placenta
15	chr8:125605000-125615800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:125605800-125617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:125606000-125612800	Weak transcription	HepG2	liver
18	chr8:125606000-125617200	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:125606400-125617000	Weak transcription	Pancreas	Pancrea
20	chr8:125606600-125617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:125607200-125612000	Weak transcription	Fetal Lung	lung
22	chr8:125607400-125611600	Enhancers	Fetal Muscle Trunk	muscle
23	chr8:125607400-125612800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr8:125607400-125615600	Weak transcription	Small Intestine	intestine
25	chr8:125607400-125617000	Enhancers	Fetal Thymus	thymus
26	chr8:125607600-125611000	Weak transcription	Fetal Heart	heart
27	chr8:125607600-125613800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:125607600-125617000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:125608000-125616600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:125608200-125612800	Weak transcription	Right Ventricle	heart
31	chr8:125608200-125615800	Weak transcription	Psoas Muscle	Psoas
32	chr8:125608200-125616400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:125608400-125612800	Weak transcription	HUVEC	blood vessel
34	chr8:125609000-125611000	Enhancers	Fetal Brain Male	brain
35	chr8:125609000-125611400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:125609000-125613000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr8:125609000-125615600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr8:125609000-125615800	Weak transcription	Primary T cells from cord blood	blood
39	chr8:125609000-125615800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr8:125609200-125616000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr8:125609200-125618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr8:125609400-125611200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:125609400-125611800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr8:125609400-125613000	Weak transcription	Fetal Stomach	stomach
45	chr8:125609400-125617000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:125609800-125611200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:125609800-125611400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr8:125609800-125611800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr8:125609800-125612000	Weak transcription	Lung	lung
50	chr8:125609800-125615200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links