Variant report

Variant	rs7816697
Chromosome Location	chr8:125613121-125613122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125607603..125609635-chr8:125611568..125614281,2	MCF-7	breast:
2	chr8:125605911..125607972-chr8:125612468..125615262,2	K562	blood:
3	chr8:125612814..125615760-chr8:125633256..125635974,2	MCF-7	breast:
4	chr8:125611688..125614263-chr8:125617134..125618920,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10100057	0.85[AMR][1000 genomes]
rs1023694	0.83[CHB][hapmap]
rs16899847	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1808600	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2014895	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857948	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3857950	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3892558	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4870908	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62530668	0.84[EUR][1000 genomes]
rs62530669	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6984853	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs752492	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
2	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
3	chr8:125602000-125620400	Weak transcription	HMEC	breast
4	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
7	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:125605000-125613800	Enhancers	Fetal Muscle Leg	muscle
9	chr8:125605000-125614200	Enhancers	Placenta	Placenta
10	chr8:125605000-125615800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:125605800-125617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:125606000-125617200	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:125606400-125617000	Weak transcription	Pancreas	Pancrea
14	chr8:125606600-125617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:125607400-125615600	Weak transcription	Small Intestine	intestine
16	chr8:125607400-125617000	Enhancers	Fetal Thymus	thymus
17	chr8:125607600-125613800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:125607600-125617000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:125608000-125616600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:125608200-125615800	Weak transcription	Psoas Muscle	Psoas
21	chr8:125608200-125616400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:125609000-125615600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr8:125609000-125615800	Weak transcription	Primary T cells from cord blood	blood
24	chr8:125609000-125615800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:125609200-125616000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr8:125609200-125618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:125609400-125617000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:125609800-125615200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:125610000-125613600	Enhancers	Brain Anterior Caudate	brain
30	chr8:125610000-125616200	Enhancers	Brain Cingulate Gyrus	brain
31	chr8:125610000-125617000	Enhancers	Primary B cells from peripheral blood	blood
32	chr8:125610000-125617600	Weak transcription	Fetal Intestine Large	intestine
33	chr8:125610200-125613600	Enhancers	Adipose Nuclei	Adipose
34	chr8:125610200-125613600	Enhancers	Brain Angular Gyrus	brain
35	chr8:125610200-125613600	Enhancers	Brain Hippocampus Middle	brain
36	chr8:125610200-125616600	Enhancers	Primary B cells from cord blood	blood
37	chr8:125610200-125616800	Enhancers	Brain Substantia Nigra	brain
38	chr8:125610400-125613600	Weak transcription	Fetal Intestine Small	intestine
39	chr8:125610600-125613600	Enhancers	Liver	Liver
40	chr8:125610600-125616800	Enhancers	Brain Germinal Matrix	brain
41	chr8:125610600-125622800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:125611200-125616800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:125611400-125617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr8:125611600-125613600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr8:125611800-125617000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:125612000-125613600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:125612000-125613600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr8:125612000-125613600	Enhancers	GM12878-XiMat	blood
49	chr8:125612000-125613800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr8:125612000-125616200	Enhancers	Right Atrium	heart

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