Variant report

Variant	rs16899847
Chromosome Location	chr8:125612356-125612357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125607603..125609635-chr8:125611568..125614281,2	MCF-7	breast:
2	chr8:125609071..125612556-chr8:125615058..125616813,3	K562	blood:
3	chr8:125607033..125612930-chr8:125826274..125829090,6	K562	blood:
4	chr8:125607333..125608980-chr8:125610302..125612712,2	K562	blood:
5	chr8:125611688..125614263-chr8:125617134..125618920,2	K562	blood:
6	chr8:125609791..125612483-chr8:125613273..125615054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction

rs_ID	r²[population]
rs1023694	0.89[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893079	0.85[AMR][1000 genomes]
rs16899867	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs16899868	0.85[AMR][1000 genomes]
rs16899870	0.85[AMR][1000 genomes]
rs16899873	0.85[AMR][1000 genomes]
rs16899876	0.85[AMR][1000 genomes]
rs3750231	0.85[AMR][1000 genomes]
rs3857948	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3892558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7816697	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs919547	0.85[AMR][1000 genomes]
rs934323	0.85[AMR][1000 genomes]

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
2	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
3	chr8:125602000-125620400	Weak transcription	HMEC	breast
4	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:125603400-125612600	Weak transcription	NHLF	lung
6	chr8:125603400-125612800	Weak transcription	Gastric	stomach
7	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
9	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:125605000-125613800	Enhancers	Fetal Muscle Leg	muscle
11	chr8:125605000-125614200	Enhancers	Placenta	Placenta
12	chr8:125605000-125615800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:125605800-125617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:125606000-125612800	Weak transcription	HepG2	liver
15	chr8:125606000-125617200	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:125606400-125617000	Weak transcription	Pancreas	Pancrea
17	chr8:125606600-125617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:125607400-125612800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:125607400-125615600	Weak transcription	Small Intestine	intestine
20	chr8:125607400-125617000	Enhancers	Fetal Thymus	thymus
21	chr8:125607600-125613800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:125607600-125617000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr8:125608000-125616600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr8:125608200-125612800	Weak transcription	Right Ventricle	heart
25	chr8:125608200-125615800	Weak transcription	Psoas Muscle	Psoas
26	chr8:125608200-125616400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:125608400-125612800	Weak transcription	HUVEC	blood vessel
28	chr8:125609000-125613000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr8:125609000-125615600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr8:125609000-125615800	Weak transcription	Primary T cells from cord blood	blood
31	chr8:125609000-125615800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:125609200-125616000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr8:125609200-125618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:125609400-125613000	Weak transcription	Fetal Stomach	stomach
35	chr8:125609400-125617000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:125609800-125615200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:125610000-125613600	Enhancers	Brain Anterior Caudate	brain
38	chr8:125610000-125616200	Enhancers	Brain Cingulate Gyrus	brain
39	chr8:125610000-125617000	Enhancers	Primary B cells from peripheral blood	blood
40	chr8:125610000-125617600	Weak transcription	Fetal Intestine Large	intestine
41	chr8:125610200-125612800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr8:125610200-125613600	Enhancers	Adipose Nuclei	Adipose
43	chr8:125610200-125613600	Enhancers	Brain Angular Gyrus	brain
44	chr8:125610200-125613600	Enhancers	Brain Hippocampus Middle	brain
45	chr8:125610200-125616600	Enhancers	Primary B cells from cord blood	blood
46	chr8:125610200-125616800	Enhancers	Brain Substantia Nigra	brain
47	chr8:125610400-125613600	Weak transcription	Fetal Intestine Small	intestine
48	chr8:125610600-125613600	Enhancers	Liver	Liver
49	chr8:125610600-125616800	Enhancers	Brain Germinal Matrix	brain
50	chr8:125610600-125622800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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