Variant report

Variant	rs16899925
Chromosome Location	chr8:125663918-125663919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125658235..125661140-chr8:125662893..125664695,2	K562	blood:
2	chr8:125654495..125656872-chr8:125662279..125664875,2	K562	blood:
3	chr8:125662862..125664990-chr8:125976076..125978116,2	K562	blood:
4	chr8:125650533..125653150-chr8:125663806..125665478,2	MCF-7	breast:
5	chr8:125662816..125665180-chr8:125675490..125677732,2	K562	blood:
6	chr8:125663736..125665496-chr8:125671253..125674701,3	MCF-7	breast:
7	chr8:125663706..125665321-chr8:125671326..125673228,2	K562	blood:
8	chr8:125663277..125665200-chr8:125679495..125682417,2	K562	blood:
9	chr8:125662479..125664337-chr8:125697312..125699450,2	MCF-7	breast:
10	chr8:125659876..125664799-chr8:125825896..125829544,9	K562	blood:
11	chr8:125661234..125665296-chr8:125825896..125829074,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10216358	0.88[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505447	1.00[JPT][hapmap]
rs16899921	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899927	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16899928	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16899930	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16899933	1.00[JPT][hapmap]
rs16899942	1.00[JPT][hapmap]
rs17374540	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28576363	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28703083	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57660221	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6989891	1.00[JPT][hapmap]
rs7010266	0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813190	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7835359	1.00[JPT][hapmap]
rs7840201	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027585	chr8:125627924-125707738	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125641200-125664200	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:125643800-125666200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:125650000-125665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:125650000-125665200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:125650000-125666800	Weak transcription	Esophagus	oesophagus
6	chr8:125654000-125666800	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:125655000-125666800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:125655000-125672200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:125655200-125666400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:125655200-125667400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:125655200-125667400	Weak transcription	NHDF-Ad	bronchial
12	chr8:125656800-125666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:125656800-125666200	Weak transcription	HMEC	breast
14	chr8:125657000-125667400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:125657000-125667600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:125657400-125666000	Weak transcription	HepG2	liver
17	chr8:125658600-125667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:125659000-125665000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:125660000-125664200	Enhancers	Left Ventricle	heart
20	chr8:125660000-125664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:125660200-125664200	Enhancers	Right Ventricle	heart
22	chr8:125660200-125664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:125660200-125664400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr8:125660400-125664400	Enhancers	Primary hematopoietic stem cells	blood
25	chr8:125660800-125664200	Enhancers	Liver	Liver
26	chr8:125660800-125664800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr8:125661000-125664400	Enhancers	Fetal Heart	heart
28	chr8:125661400-125664400	Enhancers	Primary B cells from cord blood	blood
29	chr8:125661600-125664400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr8:125661600-125667200	Weak transcription	Fetal Intestine Large	intestine
31	chr8:125661800-125664200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr8:125661800-125666200	Weak transcription	Adipose Nuclei	Adipose
33	chr8:125662000-125666200	Weak transcription	Brain Angular Gyrus	brain
34	chr8:125662000-125666800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:125662000-125666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:125662000-125678400	Weak transcription	Fetal Brain Female	brain
37	chr8:125662200-125666200	Weak transcription	Brain Anterior Caudate	brain
38	chr8:125662200-125666400	Weak transcription	NHEK	skin
39	chr8:125662200-125667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:125662200-125667600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:125662200-125667800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr8:125662400-125664000	Weak transcription	Brain Germinal Matrix	brain
43	chr8:125662400-125664200	Enhancers	Right Atrium	heart
44	chr8:125662600-125664000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:125662600-125664200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr8:125662600-125668600	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr8:125662800-125664200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr8:125662800-125664200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr8:125662800-125664400	Enhancers	Primary T cells from cord blood	blood
50	chr8:125662800-125664400	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links