Variant report

Variant	rs7835359
Chromosome Location	chr8:125608818-125608819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125603929..125607098-chr8:125608646..125611096,3	MCF-7	breast:
2	chr8:125607603..125609635-chr8:125611568..125614281,2	MCF-7	breast:
3	chr8:125581193..125583391-chr8:125607866..125609825,2	MCF-7	breast:
4	chr8:125607033..125612930-chr8:125826274..125829090,6	K562	blood:
5	chr8:125607333..125608980-chr8:125610302..125612712,2	K562	blood:
6	chr8:125607877..125610696-chr8:125617418..125620245,2	K562	blood:

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10505447	1.00[JPT][hapmap]
rs16899830	0.85[CEU][hapmap]
rs16899921	1.00[JPT][hapmap]
rs16899925	1.00[JPT][hapmap]
rs16899928	1.00[JPT][hapmap]
rs16899930	1.00[JPT][hapmap]
rs16899933	1.00[JPT][hapmap]
rs16899942	1.00[JPT][hapmap]
rs17374540	1.00[JPT][hapmap]
rs2008250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28628873	0.89[AFR][1000 genomes]
rs4007927	0.96[AFR][1000 genomes]
rs4510845	0.89[MEX][hapmap]
rs4871511	0.85[CEU][hapmap]
rs55657620	0.85[ASN][1000 genomes]
rs56177502	0.85[ASN][1000 genomes]
rs6989891	1.00[JPT][hapmap]
rs7017138	0.89[MEX][hapmap]
rs7813190	1.00[JPT][hapmap]
rs7838755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7835359	TRMT12	cis	multi-tissue	Pritchard

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125574400-125609400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
3	chr8:125585400-125609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
5	chr8:125596400-125609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:125602000-125620400	Weak transcription	HMEC	breast
7	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:125603400-125609200	Weak transcription	Fetal Intestine Large	intestine
9	chr8:125603400-125612000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:125603400-125612600	Weak transcription	NHLF	lung
11	chr8:125603400-125612800	Weak transcription	Gastric	stomach
12	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
14	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:125603600-125609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:125603600-125609000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:125603600-125611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:125603600-125612000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:125604400-125609000	Enhancers	Primary T cells from cord blood	blood
20	chr8:125605000-125609000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr8:125605000-125609000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr8:125605000-125609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:125605000-125609200	Enhancers	Brain Germinal Matrix	brain
24	chr8:125605000-125609200	Enhancers	Brain Hippocampus Middle	brain
25	chr8:125605000-125609400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:125605000-125609400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:125605000-125610200	Enhancers	Right Atrium	heart
28	chr8:125605000-125610800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr8:125605000-125613800	Enhancers	Fetal Muscle Leg	muscle
30	chr8:125605000-125614200	Enhancers	Placenta	Placenta
31	chr8:125605000-125615800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr8:125605200-125609400	Enhancers	Primary B cells from cord blood	blood
33	chr8:125605200-125609400	Enhancers	Primary B cells from peripheral blood	blood
34	chr8:125605400-125609000	Enhancers	Primary hematopoietic stem cells	blood
35	chr8:125605400-125610000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr8:125605600-125609800	Enhancers	Adipose Nuclei	Adipose
37	chr8:125605800-125609600	Enhancers	Brain Anterior Caudate	brain
38	chr8:125605800-125609600	Enhancers	Brain Cingulate Gyrus	brain
39	chr8:125605800-125617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr8:125606000-125612800	Weak transcription	HepG2	liver
41	chr8:125606000-125617200	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:125606400-125617000	Weak transcription	Pancreas	Pancrea
43	chr8:125606600-125617400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:125607000-125609200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr8:125607200-125609000	Weak transcription	Fetal Brain Male	brain
46	chr8:125607200-125612000	Weak transcription	Fetal Lung	lung
47	chr8:125607400-125609400	Enhancers	Brain Substantia Nigra	brain
48	chr8:125607400-125609600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr8:125607400-125610200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr8:125607400-125610400	Weak transcription	NHDF-Ad	bronchial

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