Variant report

Variant	rs16900017
Chromosome Location	chr8:90735264-90735265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr8:90735230-90735732	GM12878	blood:	n/a	n/a
2	RUNX3	chr8:90735233-90735717	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90732834..90736227-chr8:90736670..90741646,5	MCF-7	breast:
2	chr8:90735006..90737562-chr8:90957378..90959199,2	MCF-7	breast:
3	chr8:90734630..90736246-chr8:90739978..90742912,2	K562	blood:
4	chr8:90735002..90740593-chr8:90994599..90998168,11	MCF-7	breast:
5	chr8:90734885..90744209-chr8:90767977..90774247,14	MCF-7	breast:
6	chr8:90733158..90736113-chr8:90768378..90769934,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NBN-1	chr8:90735244-90735764	NONHSAT127622

No data

Variant related genes	Relation type
ENSG00000251136	TF binding region
ENSG00000251136	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000104312	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11535367	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16900627	1.00[CEU][hapmap]
rs35489404	0.81[ASN][1000 genomes]
rs6981616	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7017337	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7018267	0.87[ASN][1000 genomes]
rs7833399	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831389	chr8:90575517-90753120	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1031578	chr8:90670102-90757821	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	nsv6294	chr8:90705780-90750101	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90710200-90736200	Weak transcription	Adipose Nuclei	Adipose
2	chr8:90713200-90741200	Weak transcription	Left Ventricle	heart
3	chr8:90713400-90738000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:90713600-90756200	Weak transcription	Pancreas	Pancrea
5	chr8:90714200-90741400	Weak transcription	Right Ventricle	heart
6	chr8:90714400-90741000	Weak transcription	Gastric	stomach
7	chr8:90715400-90741200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:90716800-90738000	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:90717200-90741000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:90717400-90738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:90717800-90736200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:90717800-90737800	Weak transcription	NHEK	skin
13	chr8:90717800-90738000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:90717800-90738000	Weak transcription	NH-A	brain
15	chr8:90717800-90747800	Weak transcription	Ovary	ovary
16	chr8:90720800-90736000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:90720800-90742400	Weak transcription	Fetal Lung	lung
18	chr8:90721000-90740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:90721200-90736400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:90721400-90735600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:90721400-90740400	Weak transcription	Fetal Intestine Large	intestine
22	chr8:90721800-90738400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:90725200-90736200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:90725200-90740400	Weak transcription	Small Intestine	intestine
25	chr8:90726600-90741400	Weak transcription	Esophagus	oesophagus
26	chr8:90726800-90738200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:90728400-90738000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:90729200-90737800	Weak transcription	Fetal Heart	heart
29	chr8:90730200-90737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:90731000-90738200	Weak transcription	K562	blood
31	chr8:90731000-90738400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:90731400-90736400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr8:90731400-90736400	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:90731600-90736000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:90731600-90736200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr8:90731600-90736200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:90731600-90736400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr8:90731600-90736400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:90731800-90737000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:90731800-90738000	Weak transcription	NHLF	lung
41	chr8:90731800-90738600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr8:90732000-90737800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:90732000-90737800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr8:90732000-90737800	Weak transcription	NHDF-Ad	bronchial
45	chr8:90732000-90738200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:90732200-90738200	Weak transcription	HSMMtube	muscle
47	chr8:90732200-90738400	Weak transcription	HSMM	muscle
48	chr8:90732600-90736400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr8:90733200-90738000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr8:90733600-90736400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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