Variant report

Variant	rs35489404
Chromosome Location	chr8:90733271-90733272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90732834..90736227-chr8:90736670..90741646,5	MCF-7	breast:
2	chr8:90728791..90734507-chr8:90768671..90772991,6	MCF-7	breast:
3	chr8:90731255..90734229-chr8:90770926..90773381,2	MCF-7	breast:
4	chr8:90727781..90733734-chr8:90995200..90998684,11	MCF-7	breast:
5	chr8:90730098..90733347-chr8:90733512..90737608,4	MCF-7	breast:
6	chr8:90733158..90736113-chr8:90768378..90769934,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NBN-1	chr8:90733132-90733602	ENSG00000251136
2	lnc-NBN-1	chr8:90733172-90733602	ENSG00000251136
3	lnc-NBN-1	chr8:90729627-90733428	ENSG00000251136
4	lnc-NBN-1	chr8:90732820-90733604	NONHSAT127622

No data

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11535367	0.82[ASN][1000 genomes]
rs13270337	0.81[EUR][1000 genomes]
rs16900017	0.81[ASN][1000 genomes]
rs218953	0.83[ASN][1000 genomes]
rs6981616	0.84[ASN][1000 genomes]
rs7017337	0.86[ASN][1000 genomes]
rs7018267	0.84[ASN][1000 genomes]
rs7833399	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831389	chr8:90575517-90753120	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1031578	chr8:90670102-90757821	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	nsv6294	chr8:90705780-90750101	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90710200-90736200	Weak transcription	Adipose Nuclei	Adipose
2	chr8:90711200-90733800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:90713200-90741200	Weak transcription	Left Ventricle	heart
4	chr8:90713400-90738000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:90713600-90756200	Weak transcription	Pancreas	Pancrea
6	chr8:90714200-90741400	Weak transcription	Right Ventricle	heart
7	chr8:90714400-90741000	Weak transcription	Gastric	stomach
8	chr8:90715400-90741200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:90716800-90738000	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:90717200-90733400	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:90717200-90741000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:90717400-90738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:90717600-90733400	Weak transcription	Aorta	Aorta
14	chr8:90717600-90733800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:90717800-90736200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:90717800-90737800	Weak transcription	NHEK	skin
17	chr8:90717800-90738000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:90717800-90738000	Weak transcription	NH-A	brain
19	chr8:90717800-90747800	Weak transcription	Ovary	ovary
20	chr8:90720800-90736000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:90720800-90742400	Weak transcription	Fetal Lung	lung
22	chr8:90721000-90740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:90721200-90736400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:90721400-90735600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:90721400-90740400	Weak transcription	Fetal Intestine Large	intestine
26	chr8:90721800-90733400	Weak transcription	Fetal Stomach	stomach
27	chr8:90721800-90738400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr8:90725200-90736200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr8:90725200-90740400	Weak transcription	Small Intestine	intestine
30	chr8:90726600-90741400	Weak transcription	Esophagus	oesophagus
31	chr8:90726800-90738200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:90728400-90738000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:90729200-90737800	Weak transcription	Fetal Heart	heart
34	chr8:90729400-90733600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:90729400-90733800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:90729600-90733800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:90730000-90733600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:90730000-90733600	Enhancers	Osteobl	bone
39	chr8:90730200-90737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:90731000-90733400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr8:90731000-90738200	Weak transcription	K562	blood
42	chr8:90731000-90738400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:90731400-90736400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr8:90731400-90736400	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:90731600-90733400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr8:90731600-90733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:90731600-90733800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:90731600-90736000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr8:90731600-90736200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr8:90731600-90736200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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