Variant report

Variant	rs16900090
Chromosome Location	chr8:125934693-125934694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125827709..125829327-chr8:125933517..125935746,2	K562	blood:
2	chr8:125738536..125741882-chr8:125934456..125936858,4	MCF-7	breast:
3	chr8:125930758..125933677-chr8:125933854..125935992,2	MCF-7	breast:
4	chr8:125932988..125935844-chr8:125938111..125940601,2	MCF-7	breast:
5	chr8:125868680..125870635-chr8:125934172..125936239,2	MCF-7	breast:
6	chr8:125933161..125934935-chr8:125937599..125940481,2	K562	blood:
7	chr8:125827705..125829583-chr8:125932837..125935180,2	MCF-7	breast:
8	chr8:125872673..125874635-chr8:125933342..125936048,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000170873	Chromatin interaction
ENSG00000250428	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11779177	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786449	0.81[ASN][1000 genomes]
rs13273002	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16900098	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4409410	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60275472	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125932800-125936800	Weak transcription	Right Atrium	heart
2	chr8:125933800-125936600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:125934000-125936800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:125934000-125937000	Weak transcription	Placenta	Placenta
5	chr8:125934200-125935400	Weak transcription	K562	blood
6	chr8:125934400-125936400	Weak transcription	Fetal Heart	heart
7	chr8:125934400-125936400	Weak transcription	Left Ventricle	heart
8	chr8:125934400-125936600	Weak transcription	HepG2	liver
9	chr8:125934400-125937600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:125934600-125936400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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