Variant report

Variant	rs16900098
Chromosome Location	chr8:125940361-125940362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125610290..125612070-chr8:125937956..125940541,2	MCF-7	breast:
2	chr8:125938234..125940931-chr8:125949663..125952183,2	MCF-7	breast:
3	chr8:125938622..125941222-chr8:125941818..125944326,4	K562	blood:
4	chr8:125869256..125871010-chr8:125940033..125942107,2	MCF-7	breast:
5	chr8:125787394..125789828-chr8:125939944..125942662,2	MCF-7	breast:
6	chr8:125865723..125867850-chr8:125937365..125941183,3	MCF-7	breast:
7	chr8:125932988..125935844-chr8:125938111..125940601,2	MCF-7	breast:
8	chr8:125933161..125934935-chr8:125937599..125940481,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11779177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11786449	0.85[ASN][1000 genomes]
rs13273002	0.81[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16900090	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1820535	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1820536	0.86[AFR][1000 genomes]
rs35278050	0.84[ASN][1000 genomes]
rs4409410	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5012401	0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs60275472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125936600-125941200	Weak transcription	K562	blood
2	chr8:125937600-125951600	Weak transcription	Right Atrium	heart
3	chr8:125938400-125942600	Weak transcription	Left Ventricle	heart
4	chr8:125939400-125940400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:125940000-125940400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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