Variant report

Variant	rs169006
Chromosome Location	chr6:37347539-37347540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37347312..37349865-chr6:37356233..37358179,2	K562	blood:
2	chr6:37343897..37346068-chr6:37346571..37349453,3	K562	blood:
3	chr6:37346641..37348190-chr6:37418014..37420567,2	K562	blood:
4	chr6:37347312..37349055-chr6:37356679..37358607,2	K562	blood:
5	chr6:37346564..37348912-chr6:37406281..37408305,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16889749	0.98[ASN][1000 genomes]
rs169005	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195376	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195379	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195381	0.83[AMR][1000 genomes]
rs195382	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs195383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56947102	0.98[ASN][1000 genomes]
rs57118340	1.00[ASN][1000 genomes]
rs57216495	0.98[ASN][1000 genomes]
rs73423695	0.98[ASN][1000 genomes]
rs7747175	0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37328000-37361800	Strong transcription	Dnd41	blood
7	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:37335600-37351600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:37335800-37348200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:37336000-37351600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr6:37337000-37348800	Weak transcription	NHDF-Ad	bronchial
17	chr6:37337200-37353000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:37337400-37357000	Weak transcription	Stomach Mucosa	stomach
19	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
20	chr6:37337600-37352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:37337600-37354000	Weak transcription	Right Ventricle	heart
22	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:37337800-37353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:37338400-37348600	Weak transcription	HSMMtube	muscle
27	chr6:37338600-37349400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
29	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
30	chr6:37339400-37349000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:37339600-37349200	Weak transcription	Aorta	Aorta
32	chr6:37339600-37352000	Weak transcription	Colonic Mucosa	Colon
33	chr6:37339600-37354000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:37339600-37358600	Weak transcription	Gastric	stomach
35	chr6:37339800-37347600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:37339800-37347600	Weak transcription	Spleen	Spleen
37	chr6:37339800-37348600	Weak transcription	Brain Anterior Caudate	brain
38	chr6:37339800-37349600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:37339800-37349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:37339800-37355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:37339800-37358200	Weak transcription	Pancreas	Pancrea
42	chr6:37339800-37361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:37340200-37350600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:37340400-37358800	Weak transcription	Fetal Kidney	kidney
45	chr6:37341200-37352600	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:37341400-37347800	Weak transcription	Placenta	Placenta
47	chr6:37341400-37359400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr6:37342000-37351400	Strong transcription	Hela-S3	cervix
49	chr6:37342000-37352800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr6:37342200-37348200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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