Variant report

Variant	rs57118340
Chromosome Location	chr6:37339119-37339120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37337589..37340258-chr6:37350872..37353770,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16889749	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs169005	1.00[ASN][1000 genomes]
rs169006	1.00[ASN][1000 genomes]
rs195376	1.00[ASN][1000 genomes]
rs195379	1.00[ASN][1000 genomes]
rs195382	1.00[ASN][1000 genomes]
rs195383	0.98[ASN][1000 genomes]
rs195384	0.98[ASN][1000 genomes]
rs195386	0.98[ASN][1000 genomes]
rs2269055	1.00[EUR][1000 genomes]
rs2284924	1.00[EUR][1000 genomes]
rs3778014	1.00[EUR][1000 genomes]
rs56203665	1.00[EUR][1000 genomes]
rs56947102	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57216495	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59352424	1.00[EUR][1000 genomes]
rs73423680	1.00[EUR][1000 genomes]
rs73423695	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747175	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs989603	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37328000-37361800	Strong transcription	Dnd41	blood
7	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:37334000-37340400	Strong transcription	Hela-S3	cervix
9	chr6:37334200-37339200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:37334400-37339200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:37334400-37339600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:37334400-37339800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr6:37334400-37340000	Strong transcription	Duodenum Mucosa	Duodenum
14	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:37334600-37340000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:37334600-37340000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
18	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:37334800-37340800	Strong transcription	Primary B cells from cord blood	blood
21	chr6:37335000-37339800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:37335000-37341600	Strong transcription	Fetal Stomach	stomach
23	chr6:37335400-37339800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:37335600-37339800	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr6:37335600-37339800	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:37335600-37339800	Strong transcription	NHEK	skin
28	chr6:37335600-37340200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:37335600-37340200	Strong transcription	Fetal Intestine Large	intestine
30	chr6:37335600-37340600	Strong transcription	Adipose Nuclei	Adipose
31	chr6:37335600-37343800	Strong transcription	Fetal Thymus	thymus
32	chr6:37335600-37345000	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr6:37335600-37351600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:37335800-37339800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:37335800-37340400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:37335800-37340800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:37335800-37347400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:37335800-37348200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:37336000-37339800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:37336000-37351600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:37336200-37339600	Strong transcription	Fetal Brain Female	brain
42	chr6:37336200-37339800	Strong transcription	Brain Germinal Matrix	brain
43	chr6:37336200-37340400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:37336400-37339800	Enhancers	Fetal Heart	heart
45	chr6:37336600-37339200	Genic enhancers	Brain Angular Gyrus	brain
46	chr6:37336600-37339200	Strong transcription	Thymus	Thymus
47	chr6:37336600-37339600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr6:37336600-37339800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:37336600-37339800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:37336800-37339200	Strong transcription	Fetal Brain Male	brain

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