Variant report

Variant	rs73423680
Chromosome Location	chr6:37328553-37328554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr6:37328543-37329014	HEK293-T-REx	kidney:	n/a	chr6:37328713-37328734 chr6:37328723-37328732
2	SPI1	chr6:37328397-37328643	HL-60	blood:	n/a	chr6:37328449-37328462 chr6:37328471-37328484

No.	Distal block	Cell Line	Cell type
1	chr6:37326963..37328808-chr6:37396406..37398456,2	K562	blood:
2	chr6:37321631..37324225-chr6:37324472..37328939,5	MCF-7	breast:
3	chr6:37320614..37323224-chr6:37327841..37329776,2	MCF-7	breast:

Variant related genes	Relation type
RN7SL273P	TF binding region
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16889749	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs195383	0.80[ASN][1000 genomes]
rs195384	0.80[ASN][1000 genomes]
rs195386	0.80[ASN][1000 genomes]
rs195417	1.00[ASN][1000 genomes]
rs2269055	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284924	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778014	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56947102	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57118340	1.00[EUR][1000 genomes]
rs57216495	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59352424	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423695	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7747175	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs989603	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37328600	Weak transcription	Lung	lung
2	chr6:37323000-37328600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:37323000-37329000	Weak transcription	Esophagus	oesophagus
4	chr6:37323000-37330800	Weak transcription	Placenta	Placenta
5	chr6:37323000-37336600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:37323000-37336600	Weak transcription	Pancreas	Pancrea
7	chr6:37323000-37336600	Weak transcription	Psoas Muscle	Psoas
8	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:37323200-37328600	Weak transcription	Fetal Stomach	stomach
10	chr6:37323200-37328600	Weak transcription	Fetal Thymus	thymus
11	chr6:37323200-37328600	Weak transcription	Spleen	Spleen
12	chr6:37323200-37328800	Weak transcription	NHLF	lung
13	chr6:37323200-37329000	Weak transcription	HSMMtube	muscle
14	chr6:37323200-37336600	Weak transcription	Right Ventricle	heart
15	chr6:37323200-37336800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:37323200-37336800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:37323400-37328600	Weak transcription	Primary B cells from cord blood	blood
18	chr6:37323400-37328600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:37323400-37328600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:37323400-37328600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:37323400-37328800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:37323400-37328800	Weak transcription	Small Intestine	intestine
23	chr6:37323400-37328800	Weak transcription	A549	lung
24	chr6:37323400-37328800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:37323400-37329000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:37323400-37329000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:37323400-37336200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:37323600-37328800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:37323600-37329000	Weak transcription	Liver	Liver
32	chr6:37323600-37329000	Weak transcription	Brain Angular Gyrus	brain
33	chr6:37323600-37329000	Weak transcription	Fetal Lung	lung
34	chr6:37323600-37329000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:37323600-37329200	Weak transcription	HMEC	breast
36	chr6:37323600-37329200	Weak transcription	NH-A	brain
37	chr6:37323600-37336600	Weak transcription	NHDF-Ad	bronchial
38	chr6:37323600-37336800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:37323600-37336800	Weak transcription	Colonic Mucosa	Colon
40	chr6:37323600-37336800	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:37323800-37328600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:37323800-37328600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:37323800-37328800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:37323800-37336800	Weak transcription	Fetal Brain Male	brain
45	chr6:37324000-37330000	Weak transcription	Thymus	Thymus
46	chr6:37324000-37336200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:37324000-37336800	Weak transcription	Fetal Kidney	kidney
48	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:37324200-37328600	Weak transcription	Primary T cells from cord blood	blood
50	chr6:37324200-37328600	Weak transcription	Primary T cells fromperipheralblood	blood

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