Variant report

Variant	rs2284924
Chromosome Location	chr6:37327394-37327395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37325550..37328259-chr6:37334923..37336974,2	K562	blood:
2	chr6:37326963..37328808-chr6:37396406..37398456,2	K562	blood:
3	chr6:37321631..37324225-chr6:37324472..37328939,5	MCF-7	breast:
4	chr6:37325564..37327417-chr6:37331052..37333832,2	K562	blood:

Variant related genes	Relation type
ENSG00000112130	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11548070	1.00[TSI][hapmap]
rs11970265	1.00[TSI][hapmap]
rs16889749	0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs195379	0.82[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap]
rs195382	0.85[JPT][hapmap]
rs195383	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs195384	0.82[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs195386	0.82[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs195417	1.00[ASN][1000 genomes]
rs2269055	0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778014	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203665	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56947102	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57118340	1.00[EUR][1000 genomes]
rs57216495	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59352424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905400	1.00[TSI][hapmap]
rs6908216	1.00[TSI][hapmap]
rs73423680	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423695	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7740399	1.00[TSI][hapmap]
rs7747175	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7753853	1.00[TSI][hapmap]
rs7773273	1.00[TSI][hapmap]
rs989603	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9918399	1.00[TSI][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37328000	Weak transcription	Aorta	Aorta
2	chr6:37323000-37328000	Weak transcription	Left Ventricle	heart
3	chr6:37323000-37328200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:37323000-37328400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:37323000-37328600	Weak transcription	Lung	lung
6	chr6:37323000-37328600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:37323000-37329000	Weak transcription	Esophagus	oesophagus
8	chr6:37323000-37330800	Weak transcription	Placenta	Placenta
9	chr6:37323000-37336600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:37323000-37336600	Weak transcription	Pancreas	Pancrea
11	chr6:37323000-37336600	Weak transcription	Psoas Muscle	Psoas
12	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:37323200-37327400	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:37323200-37328000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37323200-37328000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:37323200-37328000	Weak transcription	Ovary	ovary
17	chr6:37323200-37328600	Weak transcription	Fetal Stomach	stomach
18	chr6:37323200-37328600	Weak transcription	Fetal Thymus	thymus
19	chr6:37323200-37328600	Weak transcription	Spleen	Spleen
20	chr6:37323200-37328800	Weak transcription	NHLF	lung
21	chr6:37323200-37329000	Weak transcription	HSMMtube	muscle
22	chr6:37323200-37336600	Weak transcription	Right Ventricle	heart
23	chr6:37323200-37336800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:37323200-37336800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:37323400-37327800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:37323400-37328000	Weak transcription	Fetal Intestine Large	intestine
27	chr6:37323400-37328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:37323400-37328200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:37323400-37328200	Weak transcription	Osteobl	bone
30	chr6:37323400-37328400	Weak transcription	HSMM	muscle
31	chr6:37323400-37328600	Weak transcription	Primary B cells from cord blood	blood
32	chr6:37323400-37328600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:37323400-37328600	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:37323400-37328600	Weak transcription	Fetal Intestine Small	intestine
35	chr6:37323400-37328800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:37323400-37328800	Weak transcription	Small Intestine	intestine
37	chr6:37323400-37328800	Weak transcription	A549	lung
38	chr6:37323400-37328800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr6:37323400-37329000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:37323400-37329000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:37323400-37336200	Weak transcription	Brain Germinal Matrix	brain
42	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr6:37323600-37327400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:37323600-37327400	Enhancers	HepG2	liver
46	chr6:37323600-37327800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:37323600-37328000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:37323600-37328000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:37323600-37328000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:37323600-37328200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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