Variant report

Variant	rs7753853
Chromosome Location	chr6:37211029-37211030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37208961..37211353-chr6:37230274..37233612,3	K562	blood:
2	chr6:37204495..37206124-chr6:37209965..37212301,2	MCF-7	breast:
3	chr6:37207707..37209642-chr6:37210395..37212218,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11548070	1.00[TSI][hapmap]
rs11970265	1.00[TSI][hapmap]
rs195379	1.00[TSI][hapmap]
rs195386	1.00[TSI][hapmap]
rs2284924	1.00[TSI][hapmap]
rs262923	0.84[YRI][hapmap]
rs2842618	0.84[YRI][hapmap]
rs55740797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56222403	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60947036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	1.00[TSI][hapmap]
rs6908216	1.00[TSI][hapmap]
rs6917628	0.83[ASW][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417837	1.00[AMR][1000 genomes]
rs73417847	1.00[AMR][1000 genomes]
rs73417851	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417853	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740399	1.00[TSI][hapmap]
rs7773273	1.00[TSI][hapmap]
rs9470472	1.00[TSI][hapmap]
rs9918398	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9918399	0.83[ASW][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37204600-37212600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:37205800-37213000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:37206000-37213400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:37206200-37214800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:37206400-37213000	Weak transcription	Aorta	Aorta
6	chr6:37206800-37213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:37207000-37213600	Enhancers	Fetal Stomach	stomach
8	chr6:37207200-37213600	Enhancers	HUVEC	blood vessel
9	chr6:37207400-37212200	Enhancers	NHDF-Ad	bronchial
10	chr6:37207400-37212400	Enhancers	Fetal Intestine Large	intestine
11	chr6:37207400-37213400	Enhancers	Fetal Heart	heart
12	chr6:37207400-37213400	Enhancers	HMEC	breast
13	chr6:37207600-37214800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:37208000-37212200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:37208000-37212800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:37208000-37214600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:37208400-37211400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:37208400-37211400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:37208400-37211600	Weak transcription	Colonic Mucosa	Colon
20	chr6:37208400-37211600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:37208400-37211600	Enhancers	HepG2	liver
22	chr6:37208400-37212000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:37208400-37212600	Weak transcription	Brain Anterior Caudate	brain
24	chr6:37208600-37212200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:37208600-37212600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:37208600-37212600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:37208600-37212800	Weak transcription	GM12878-XiMat	blood
28	chr6:37208800-37212400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:37209000-37211800	Enhancers	Ovary	ovary
30	chr6:37209000-37213400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:37209200-37211200	Enhancers	Fetal Thymus	thymus
32	chr6:37209200-37211600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:37209200-37213400	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:37209400-37214000	Weak transcription	Dnd41	blood
35	chr6:37209600-37211800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:37209800-37211800	Enhancers	Right Atrium	heart
37	chr6:37209800-37213200	Enhancers	Placenta	Placenta
38	chr6:37209800-37213400	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:37209800-37214200	Enhancers	Left Ventricle	heart
40	chr6:37209800-37214400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:37210000-37211200	Enhancers	Stomach Smooth Muscle	stomach
42	chr6:37210000-37211200	Flanking Active TSS	NHEK	skin
43	chr6:37210000-37211400	Weak transcription	Lung	lung
44	chr6:37210000-37211600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:37210000-37211600	Flanking Active TSS	Hela-S3	cervix
46	chr6:37210000-37212000	Enhancers	Pancreas	Pancrea
47	chr6:37210000-37212600	Flanking Active TSS	K562	blood
48	chr6:37210000-37213400	Enhancers	Colon Smooth Muscle	Colon
49	chr6:37210000-37214400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:37210200-37211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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