Variant report

Variant	rs6905400
Chromosome Location	chr6:37269564-37269565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37268575..37270100-chr6:37303447..37306274,2	K562	blood:
2	chr6:37264991..37266905-chr6:37268563..37270926,2	K562	blood:
3	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs11548070	1.00[ASW][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11970519	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs195379	1.00[TSI][hapmap]
rs195386	1.00[TSI][hapmap]
rs2284924	1.00[TSI][hapmap]
rs55774623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	1.00[ASW][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941767	1.00[YRI][hapmap]
rs73417893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	1.00[EUR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421909	0.95[AFR][1000 genomes]
rs73421911	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740399	1.00[ASW][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753853	1.00[TSI][hapmap]
rs7759469	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773185	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	0.95[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918399	1.00[TSI][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37250200-37269800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
4	chr6:37252800-37277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:37253000-37275600	Weak transcription	A549	lung
6	chr6:37253000-37277000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
9	chr6:37254000-37273600	Weak transcription	HMEC	breast
10	chr6:37254800-37271400	Strong transcription	Primary B cells from cord blood	blood
11	chr6:37255600-37279600	Weak transcription	NHDF-Ad	bronchial
12	chr6:37255800-37272000	Weak transcription	Fetal Kidney	kidney
13	chr6:37259800-37270600	Weak transcription	Gastric	stomach
14	chr6:37259800-37275600	Weak transcription	Fetal Brain Male	brain
15	chr6:37260000-37270400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:37260000-37270400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:37260000-37270400	Weak transcription	NHLF	lung
18	chr6:37260000-37276000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:37260200-37270000	Weak transcription	Right Ventricle	heart
20	chr6:37260200-37270400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:37260200-37270600	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:37260200-37270600	Weak transcription	NHEK	skin
23	chr6:37260200-37270800	Weak transcription	Small Intestine	intestine
24	chr6:37260200-37273600	Weak transcription	Esophagus	oesophagus
25	chr6:37260200-37274000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:37260400-37269600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:37260400-37270200	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:37260600-37270200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:37260600-37270400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:37260600-37275400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:37260800-37275600	Weak transcription	Brain Angular Gyrus	brain
32	chr6:37261400-37270200	Weak transcription	Spleen	Spleen
33	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:37261800-37270400	Weak transcription	Brain Germinal Matrix	brain
35	chr6:37261800-37280800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:37262000-37270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:37262400-37269600	Weak transcription	Lung	lung
38	chr6:37262400-37270000	Weak transcription	HSMMtube	muscle
39	chr6:37262400-37270400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:37262400-37270400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:37262400-37270800	Weak transcription	Aorta	Aorta
42	chr6:37262400-37273400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:37262400-37273800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:37262400-37275600	Weak transcription	Brain Anterior Caudate	brain
45	chr6:37262400-37277000	Weak transcription	Psoas Muscle	Psoas
46	chr6:37262600-37269800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:37262600-37270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:37262600-37275400	Weak transcription	Fetal Brain Female	brain
49	chr6:37263200-37280600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:37263800-37269800	Weak transcription	Primary hematopoietic stem cells	blood

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