Variant report

Variant	rs73419828
Chromosome Location	chr6:37229445-37229446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37228464..37231833-chr6:37231945..37233770,3	K562	blood:
2	chr6:37228429..37230381-chr6:37249969..37252001,2	MCF-7	breast:
3	chr6:37229358..37230947-chr6:37264966..37266812,2	K562	blood:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11548070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55774623	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	1.00[EUR][1000 genomes]
rs6926325	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73419818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	1.00[AMR][1000 genomes]
rs73423614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	1.00[AMR][1000 genomes]
rs7740399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	1.00[AMR][1000 genomes]
rs7773185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37230200	Weak transcription	Left Ventricle	heart
2	chr6:37226400-37231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:37226400-37244000	Weak transcription	Gastric	stomach
4	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37226600-37232000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:37226600-37232200	Weak transcription	Ovary	ovary
8	chr6:37226600-37232600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:37226600-37234400	Weak transcription	Fetal Intestine Small	intestine
10	chr6:37226600-37237000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:37226600-37237400	Weak transcription	Placenta	Placenta
12	chr6:37226600-37237400	Weak transcription	HSMM	muscle
13	chr6:37226600-37240200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:37226600-37240200	Weak transcription	Aorta	Aorta
15	chr6:37226600-37243000	Weak transcription	Pancreas	Pancrea
16	chr6:37226600-37247200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:37226600-37247200	Weak transcription	Esophagus	oesophagus
18	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:37226800-37230200	Weak transcription	Right Ventricle	heart
21	chr6:37226800-37230400	Weak transcription	Thymus	Thymus
22	chr6:37226800-37237400	Weak transcription	NHDF-Ad	bronchial
23	chr6:37226800-37247000	Weak transcription	HSMMtube	muscle
24	chr6:37227000-37230400	Weak transcription	Fetal Brain Female	brain
25	chr6:37227000-37230400	Weak transcription	Small Intestine	intestine
26	chr6:37227000-37236800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:37227000-37237000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:37227000-37247200	Weak transcription	Right Atrium	heart
29	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:37227200-37229600	Enhancers	HepG2	liver
31	chr6:37227200-37232400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:37227200-37237200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:37227200-37237400	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:37227200-37238400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:37227200-37241400	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:37227200-37247200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:37227200-37247200	Weak transcription	Brain Substantia Nigra	brain
38	chr6:37227200-37247200	Weak transcription	NHLF	lung
39	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
40	chr6:37227400-37230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:37227400-37230000	Weak transcription	Stomach Mucosa	stomach
42	chr6:37227400-37230200	Weak transcription	Fetal Heart	heart
43	chr6:37227400-37231600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:37227400-37232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:37227400-37232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:37227400-37232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:37227400-37234200	Weak transcription	Fetal Stomach	stomach
48	chr6:37227400-37234400	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:37227400-37235600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:37227400-37235800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links