Variant report

Variant	rs58315142
Chromosome Location	chr6:37270756-37270757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37269968..37271528-chr6:37287262..37289720,2	MCF-7	breast:
2	chr6:37269659..37271590-chr6:37271673..37274335,2	K562	blood:
3	chr6:37225084..37227430-chr6:37270601..37272420,2	MCF-7	breast:
4	chr6:37264991..37266905-chr6:37268563..37270926,2	K562	blood:
5	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:

Variant related genes	Relation type
ENSG00000065491	Chromatin interaction
ENSG00000172738	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11548070	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55774623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	1.00[EUR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421909	0.86[AFR][1000 genomes]
rs73421911	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423614	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	1.00[AMR][1000 genomes]
rs7740399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
3	chr6:37252800-37277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37253000-37275600	Weak transcription	A549	lung
5	chr6:37253000-37277000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
8	chr6:37254000-37273600	Weak transcription	HMEC	breast
9	chr6:37254800-37271400	Strong transcription	Primary B cells from cord blood	blood
10	chr6:37255600-37279600	Weak transcription	NHDF-Ad	bronchial
11	chr6:37255800-37272000	Weak transcription	Fetal Kidney	kidney
12	chr6:37259800-37275600	Weak transcription	Fetal Brain Male	brain
13	chr6:37260000-37276000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:37260200-37270800	Weak transcription	Small Intestine	intestine
15	chr6:37260200-37273600	Weak transcription	Esophagus	oesophagus
16	chr6:37260200-37274000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:37260600-37275400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:37260800-37275600	Weak transcription	Brain Angular Gyrus	brain
19	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:37261800-37280800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:37262000-37270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:37262400-37270800	Weak transcription	Aorta	Aorta
23	chr6:37262400-37273400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:37262400-37273800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:37262400-37275600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:37262400-37277000	Weak transcription	Psoas Muscle	Psoas
27	chr6:37262600-37275400	Weak transcription	Fetal Brain Female	brain
28	chr6:37263200-37280600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:37264200-37270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:37264800-37277600	Strong transcription	Primary T cells from cord blood	blood
31	chr6:37265600-37272200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:37267200-37274600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr6:37268200-37275000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:37268400-37271000	Genic enhancers	Dnd41	blood
36	chr6:37268400-37273200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:37268400-37274600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:37268400-37277400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:37268400-37277600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:37268600-37271000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:37268600-37271000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:37268600-37273000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:37268600-37274200	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:37268600-37274400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:37268600-37274400	Strong transcription	Osteobl	bone
46	chr6:37268600-37274600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:37268800-37271600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:37269000-37271200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:37269000-37272200	Genic enhancers	Fetal Thymus	thymus
50	chr6:37269000-37274600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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