Variant report

Variant	rs1391346
Chromosome Location	chr6:37397917-37397918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:37397886-37397936	HCT-116	colon:	n/a
2	chr6:37397886-37397936	HCM	heart:	n/a
3	chr6:37397886-37397936	HNPCEpiC	eye:	n/a
4	chr6:37397886-37397936	Jurkat	blood:	n/a
5	chr6:37397886-37397936	AG09319	gingival:	n/a
6	chr6:37397886-37397936	RPTEC	kidney:	n/a
7	chr6:37397886-37397936	LNCaP	prostate:	n/a
8	chr6:37397886-37397936	T-47D	breast:	n/a
9	chr6:37397886-37397936	HCPEpiC	choroid plexus:	n/a
10	chr6:37397886-37397936	IMR90	lung:	fetal
11	chr6:37397886-37397936	BE2_C	brain:	n/a
12	chr6:37397886-37397936	HEEpiC	esophagus:	n/a
13	chr6:37397886-37397936	ovcar-3	ovarian:	n/a
14	chr6:37397886-37397936	HRPEpiC	eye:	n/a
15	chr6:37397886-37397936	HL-60	blood:	n/a
16	chr6:37397886-37397936	AG10803	skin:	n/a
17	chr6:37397886-37397936	HIPEpiC	eye:	n/a
18	chr6:37397886-37397936	HEK293	kidney:	embryo
19	chr6:37397886-37397936	HRCEpiC	kidney:	n/a
20	chr6:37397886-37397936	PANC-1	pancreas:	n/a
21	chr6:37397886-37397936	AoSMC	blood vessel:	n/a
22	chr6:37397886-37397936	GM06990	blood:	n/a
23	chr6:37397886-37397936	AG04449	skin:	fetal
24	chr6:37397886-37397936	Hela-S3	cervix:	n/a
25	chr6:37397886-37397936	GM19239	blood:	n/a
26	chr6:37397886-37397936	SAEC	small airway:	n/a
27	chr6:37397886-37397936	SK-N-MC	brain:	n/a
28	chr6:37397886-37397936	AG04450	lung:	fetal
29	chr6:37397886-37397936	CMK	blood:	n/a
30	chr6:37397886-37397936	HUVEC	blood vessel:	n/a
31	chr6:37397886-37397936	U87	brain:	n/a
32	chr6:37397886-37397936	SK-N-SH	brain:	n/a
33	chr6:37397886-37397936	ECC-1	luminal epithelium:	n/a
34	chr6:37397886-37397936	Caco-2	colon:	n/a
35	chr6:37397886-37397936	HPAEpiC	pulmonary alveolar:	n/a
36	chr6:37397886-37397936	A549	lung:	n/a
37	chr6:37397886-37397936	HMEC	breast:	n/a
38	chr6:37397886-37397936	MCF-7	breast:	n/a
39	chr6:37397886-37397936	K562	blood:	n/a
40	chr6:37397886-37397936	NB4	blood:	n/a
41	chr6:37397886-37397936	BJ	skin:	n/a
42	chr6:37397886-37397936	MCF10A-Er-Src	breast:	n/a
43	chr6:37397886-37397936	GM12892	blood:	n/a
44	chr6:37397886-37397936	ProgFib	skin:	n/a
45	chr6:37397886-37397936	SK-N-SH_RA	brain:	n/a
46	chr6:37397886-37397936	HCF	heart:	n/a
47	chr6:37397886-37397936	PFSK-1	brain:	n/a
48	chr6:37397886-37397936	AG09309	skin:	n/a
49	chr6:37397886-37397936	GM12891	blood:	n/a
50	chr6:37397886-37397936	SKMC	muscle:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37326963..37328808-chr6:37396406..37398456,2	K562	blood:
2	chr6:37376102..37378184-chr6:37397531..37399649,2	K562	blood:
3	chr6:37390262..37393860-chr6:37393896..37398106,6	MCF-7	breast:
4	chr6:37326963..37329509-chr6:37395031..37398456,3	K562	blood:
5	chr6:37396986..37398925-chr6:37399222..37402219,2	MCF-7	breast:
6	chr6:37395898..37398145-chr6:37408899..37411047,2	K562	blood:

No data

Variant related genes	Relation type
CMTR1	CpG island
ENSG00000239953	Chromatin interaction
ENSG00000137200	Chromatin interaction

rs_ID	r²[population]
rs11548070	1.00[AMR][1000 genomes]
rs11961544	1.00[AMR][1000 genomes]
rs11961609	1.00[AMR][1000 genomes]
rs11961942	1.00[AMR][1000 genomes]
rs11963012	1.00[AMR][1000 genomes]
rs11964774	1.00[AMR][1000 genomes]
rs11965707	1.00[AMR][1000 genomes]
rs11966215	1.00[AMR][1000 genomes]
rs11966913	1.00[AMR][1000 genomes]
rs11970519	1.00[AMR][1000 genomes]
rs55774623	1.00[AMR][1000 genomes]
rs55901294	1.00[AMR][1000 genomes]
rs56008535	1.00[AMR][1000 genomes]
rs56017152	1.00[AMR][1000 genomes]
rs56201211	1.00[AMR][1000 genomes]
rs56331451	1.00[AMR][1000 genomes]
rs56402325	1.00[AMR][1000 genomes]
rs56992129	1.00[AMR][1000 genomes]
rs56995621	1.00[AMR][1000 genomes]
rs57091508	1.00[AMR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes]
rs57167818	1.00[AMR][1000 genomes]
rs57194078	1.00[AMR][1000 genomes]
rs57300303	1.00[AMR][1000 genomes]
rs57379477	1.00[AMR][1000 genomes]
rs57620048	1.00[AMR][1000 genomes]
rs57879855	1.00[AMR][1000 genomes]
rs57904157	1.00[AMR][1000 genomes]
rs58277176	1.00[AMR][1000 genomes]
rs58315142	1.00[AMR][1000 genomes]
rs58819653	1.00[AMR][1000 genomes]
rs58931517	1.00[AMR][1000 genomes]
rs58943251	1.00[AMR][1000 genomes]
rs59078138	1.00[AMR][1000 genomes]
rs59230765	1.00[AMR][1000 genomes]
rs59413560	1.00[AMR][1000 genomes]
rs59584013	1.00[AMR][1000 genomes]
rs59827015	1.00[AMR][1000 genomes]
rs59910191	1.00[AMR][1000 genomes]
rs60081780	1.00[AMR][1000 genomes]
rs60135241	1.00[AMR][1000 genomes]
rs60144484	1.00[AMR][1000 genomes]
rs60153228	1.00[AMR][1000 genomes]
rs60460682	1.00[AMR][1000 genomes]
rs60567861	1.00[AMR][1000 genomes]
rs60924029	1.00[AMR][1000 genomes]
rs61035057	1.00[AMR][1000 genomes]
rs61175584	1.00[AMR][1000 genomes]
rs61271443	1.00[AMR][1000 genomes]
rs61431090	1.00[AMR][1000 genomes]
rs61435770	1.00[AMR][1000 genomes]
rs6903801	1.00[AMR][1000 genomes]
rs6905400	1.00[AMR][1000 genomes]
rs6906388	1.00[AMR][1000 genomes]
rs6907008	1.00[AMR][1000 genomes]
rs6908216	1.00[AMR][1000 genomes]
rs6909751	1.00[AMR][1000 genomes]
rs6911541	1.00[AMR][1000 genomes]
rs6911592	1.00[AMR][1000 genomes]
rs6916893	1.00[AMR][1000 genomes]
rs6919142	1.00[AMR][1000 genomes]
rs6919900	1.00[AMR][1000 genomes]
rs6926325	1.00[AMR][1000 genomes]
rs6926402	1.00[AMR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes]
rs6933701	1.00[AMR][1000 genomes]
rs6934560	1.00[AMR][1000 genomes]
rs6940193	1.00[AMR][1000 genomes]
rs73417893	1.00[AMR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes]
rs73419821	1.00[AMR][1000 genomes]
rs73419823	1.00[AMR][1000 genomes]
rs73419828	1.00[AMR][1000 genomes]
rs73419831	1.00[AMR][1000 genomes]
rs73419832	1.00[AMR][1000 genomes]
rs73419842	1.00[AMR][1000 genomes]
rs73419844	1.00[AMR][1000 genomes]
rs73419847	1.00[AMR][1000 genomes]
rs73419848	1.00[AMR][1000 genomes]
rs73419851	1.00[AMR][1000 genomes]
rs73419858	1.00[AMR][1000 genomes]
rs73419870	1.00[AMR][1000 genomes]
rs73419874	1.00[AMR][1000 genomes]
rs73419875	1.00[AMR][1000 genomes]
rs73419885	1.00[AMR][1000 genomes]
rs73419889	1.00[AMR][1000 genomes]
rs73419894	1.00[AMR][1000 genomes]
rs73419895	1.00[AMR][1000 genomes]
rs73419902	1.00[AMR][1000 genomes]
rs73421904	1.00[AMR][1000 genomes]
rs73421905	1.00[AMR][1000 genomes]
rs73421911	1.00[AMR][1000 genomes]
rs73421916	1.00[AMR][1000 genomes]
rs73421942	1.00[AMR][1000 genomes]
rs73421945	1.00[AMR][1000 genomes]
rs73421961	1.00[AMR][1000 genomes]
rs73421965	1.00[AMR][1000 genomes]
rs73421969	1.00[AMR][1000 genomes]
rs73421970	1.00[AMR][1000 genomes]
rs73421994	1.00[AMR][1000 genomes]
rs73423614	1.00[AMR][1000 genomes]
rs73423615	1.00[AMR][1000 genomes]
rs73423617	1.00[AMR][1000 genomes]
rs73730562	1.00[AMR][1000 genomes]
rs73730590	1.00[AMR][1000 genomes]
rs73732936	1.00[AMR][1000 genomes]
rs73732941	1.00[AMR][1000 genomes]
rs7740399	1.00[AMR][1000 genomes]
rs7748450	1.00[AMR][1000 genomes]
rs7748706	1.00[AMR][1000 genomes]
rs7750754	1.00[AMR][1000 genomes]
rs7759469	1.00[AMR][1000 genomes]
rs7762309	1.00[AMR][1000 genomes]
rs7764918	1.00[AMR][1000 genomes]
rs7766759	1.00[AMR][1000 genomes]
rs7768516	1.00[AMR][1000 genomes]
rs7768639	1.00[AMR][1000 genomes]
rs7773185	1.00[AMR][1000 genomes]
rs7773273	1.00[AMR][1000 genomes]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807065	chr6:37379409-37399185	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37395200-37400000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:37395200-37400000	Weak transcription	HepG2	liver
3	chr6:37396200-37398000	Enhancers	K562	blood
4	chr6:37396200-37400200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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