Variant report

Variant	rs7768516
Chromosome Location	chr6:37279403-37279404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37278969..37281772-chr6:37464044..37467373,3	K562	blood:
2	chr6:37278426..37281348-chr6:37283112..37285978,2	MCF-7	breast:
3	chr6:37269212..37274068-chr6:37276535..37284218,11	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11548070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55774623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	1.00[EUR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421909	0.93[AFR][1000 genomes]
rs73421911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740399	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:37251000-37283800	Weak transcription	Hela-S3	cervix
3	chr6:37253000-37280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:37253000-37284600	Weak transcription	Stomach Mucosa	stomach
5	chr6:37255600-37279600	Weak transcription	NHDF-Ad	bronchial
6	chr6:37261600-37286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:37261800-37280800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:37263200-37280600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:37265600-37283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:37270800-37280200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:37271000-37280600	Weak transcription	Ovary	ovary
12	chr6:37271000-37280600	Weak transcription	NHLF	lung
13	chr6:37271000-37281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:37271200-37281400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:37271200-37281600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:37271200-37283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:37271400-37279600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:37271800-37280600	Weak transcription	Aorta	Aorta
19	chr6:37271800-37280800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:37271800-37285600	Weak transcription	Small Intestine	intestine
21	chr6:37272200-37280200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:37272200-37281600	Weak transcription	HSMM	muscle
23	chr6:37272400-37280800	Weak transcription	Fetal Kidney	kidney
24	chr6:37272800-37279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:37273000-37280200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:37273200-37280200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:37273400-37280600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:37273400-37285400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:37274000-37280800	Weak transcription	Pancreas	Pancrea
30	chr6:37274200-37280200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:37274200-37280200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:37274200-37280400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:37274200-37280600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:37274200-37280600	Weak transcription	Gastric	stomach
35	chr6:37274200-37280800	Weak transcription	Colonic Mucosa	Colon
36	chr6:37274200-37281400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:37274400-37280400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:37274400-37280600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:37274400-37280600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:37274400-37281400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:37274600-37280200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:37274600-37280200	Weak transcription	HSMMtube	muscle
43	chr6:37274600-37287000	Weak transcription	HMEC	breast
44	chr6:37274800-37280400	Weak transcription	GM12878-XiMat	blood
45	chr6:37274800-37280600	Weak transcription	Spleen	Spleen
46	chr6:37274800-37280800	Weak transcription	Fetal Intestine Large	intestine
47	chr6:37275000-37279600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:37275000-37280600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:37275000-37280800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:37276200-37279600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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