Variant report

Variant	rs61271443
Chromosome Location	chr6:37248423-37248424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37247600..37250323-chr6:37252461..37254000,2	K562	blood:
2	chr6:37246383..37248879-chr6:37249082..37251574,2	MCF-7	breast:
3	chr6:37208175..37211022-chr6:37248021..37250204,2	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11548070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55774623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	1.00[EUR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421909	1.00[AFR][1000 genomes]
rs73421911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423614	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:37232400-37255000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37233400-37250400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:37234000-37251800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:37235000-37249200	Weak transcription	Brain Germinal Matrix	brain
10	chr6:37235800-37249000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:37236000-37250200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:37237800-37251000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:37238800-37249600	Weak transcription	NH-A	brain
14	chr6:37238800-37250200	Weak transcription	A549	lung
15	chr6:37238800-37250200	Weak transcription	HUVEC	blood vessel
16	chr6:37238800-37250600	Weak transcription	NHDF-Ad	bronchial
17	chr6:37240200-37250000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:37240400-37249800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:37240600-37250400	Weak transcription	Aorta	Aorta
20	chr6:37241200-37248800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:37241200-37251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:37241800-37251000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:37242600-37250200	Weak transcription	Fetal Kidney	kidney
25	chr6:37243200-37249200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:37244000-37248600	Enhancers	Liver	Liver
27	chr6:37245200-37250400	Weak transcription	Pancreas	Pancrea
28	chr6:37245400-37250400	Weak transcription	Fetal Brain Male	brain
29	chr6:37246000-37256600	Genic enhancers	Dnd41	blood
30	chr6:37246000-37259600	Weak transcription	Small Intestine	intestine
31	chr6:37246200-37250000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:37246200-37253200	Strong transcription	NHEK	skin
33	chr6:37246200-37253800	Genic enhancers	Fetal Thymus	thymus
34	chr6:37246200-37256400	Strong transcription	HepG2	liver
35	chr6:37246400-37258000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:37246600-37252600	Enhancers	Psoas Muscle	Psoas
37	chr6:37246600-37255600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:37246600-37256200	Strong transcription	Primary T cells from cord blood	blood
39	chr6:37246600-37256200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:37246600-37256600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:37246800-37249200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:37246800-37249600	Strong transcription	K562	blood
43	chr6:37246800-37250000	Weak transcription	Colonic Mucosa	Colon
44	chr6:37246800-37253000	Genic enhancers	Fetal Muscle Leg	muscle
45	chr6:37246800-37255600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:37246800-37255800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:37246800-37256200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr6:37246800-37256400	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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