Variant report

Variant	rs58819653
Chromosome Location	chr6:37250810-37250811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37250673..37254138-chr6:37255765..37259618,4	K562	blood:
2	chr6:37228429..37230381-chr6:37249969..37252001,2	MCF-7	breast:
3	chr6:37246383..37248879-chr6:37249082..37251574,2	MCF-7	breast:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11548070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55774623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6926325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	1.00[EUR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421909	1.00[AFR][1000 genomes]
rs73421911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423614	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:37232400-37255000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37234000-37251800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:37237800-37251000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:37241200-37251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:37241800-37251000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:37242000-37281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:37246000-37256600	Genic enhancers	Dnd41	blood
9	chr6:37246000-37259600	Weak transcription	Small Intestine	intestine
10	chr6:37246200-37253200	Strong transcription	NHEK	skin
11	chr6:37246200-37253800	Genic enhancers	Fetal Thymus	thymus
12	chr6:37246200-37256400	Strong transcription	HepG2	liver
13	chr6:37246400-37258000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:37246600-37252600	Enhancers	Psoas Muscle	Psoas
15	chr6:37246600-37255600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:37246600-37256200	Strong transcription	Primary T cells from cord blood	blood
17	chr6:37246600-37256200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:37246600-37256600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:37246800-37253000	Genic enhancers	Fetal Muscle Leg	muscle
20	chr6:37246800-37255600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:37246800-37255800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:37246800-37256200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr6:37246800-37256400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr6:37246800-37263400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:37246800-37264600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:37246800-37266200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:37247000-37252000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:37247000-37252800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:37247000-37255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:37247000-37256400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:37247000-37258000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:37247000-37263800	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:37247000-37264000	Strong transcription	Fetal Intestine Large	intestine
34	chr6:37247000-37264400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:37247000-37265800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:37247200-37253000	Strong transcription	Esophagus	oesophagus
37	chr6:37247200-37253200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:37247200-37253800	Strong transcription	Fetal Intestine Small	intestine
39	chr6:37247200-37253800	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:37247200-37255600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:37247200-37256200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:37247200-37256800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:37247200-37263800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:37247400-37252800	Strong transcription	Fetal Brain Female	brain
45	chr6:37247400-37253000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:37247400-37255200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:37247600-37266000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:37248000-37251000	Weak transcription	Brain Substantia Nigra	brain
49	chr6:37248000-37255200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:37248000-37263400	Strong transcription	Placenta	Placenta

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