Variant report

Variant	rs6934560
Chromosome Location	chr6:37219821-37219822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37137655..37140035-chr6:37219103..37221003,2	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11548070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55774623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	1.00[EUR][1000 genomes]
rs6926325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73419818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	1.00[AMR][1000 genomes]
rs73423614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	1.00[AMR][1000 genomes]
rs7740399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	1.00[AMR][1000 genomes]
rs7773185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349092	chr6:37219626-37219993	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37213400-37224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:37213400-37225600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:37214400-37224600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:37214400-37224800	Weak transcription	Hela-S3	cervix
5	chr6:37214800-37225200	Weak transcription	Ovary	ovary
6	chr6:37215000-37224600	Weak transcription	Osteobl	bone
7	chr6:37218200-37220200	Enhancers	Dnd41	blood
8	chr6:37218800-37220200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:37219200-37223800	Weak transcription	K562	blood
10	chr6:37219400-37224600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:37219600-37224600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:37219600-37224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:37219600-37224600	Weak transcription	HMEC	breast
14	chr6:37219800-37224800	Weak transcription	HUVEC	blood vessel

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