Variant report

Variant	rs55774623
Chromosome Location	chr6:37232286-37232287
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37228464..37231833-chr6:37231945..37233770,3	K562	blood:
2	chr6:37190337..37192037-chr6:37231532..37234101,2	K562	blood:
3	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
4	chr6:37208961..37211353-chr6:37230274..37233612,3	K562	blood:
5	chr6:37221803..37229301-chr6:37229686..37238425,11	K562	blood:
6	chr6:37217456..37219372-chr6:37229675..37232557,2	K562	blood:

Variant related genes	Relation type
ENSG00000172738	Chromatin interaction
ENSG00000065491	Chromatin interaction
ENSG00000238375	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11548070	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961544	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961609	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11963012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970265	1.00[EUR][1000 genomes]
rs11970519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1391346	1.00[AMR][1000 genomes]
rs55901294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56008535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56201211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56402325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56992129	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56995621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57091508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57137816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57167818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57194078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57620048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57879855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58277176	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58315142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819653	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58943251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59078138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59230765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59413560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827015	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910191	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081780	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135241	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60144484	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60153228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60460682	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60567861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61035057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61175584	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271443	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61431090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61435770	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903801	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6908216	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919142	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919900	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920007	1.00[EUR][1000 genomes]
rs6926325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932222	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934560	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417899	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73419818	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419858	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419874	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419885	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419889	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419895	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419902	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421909	0.81[AFR][1000 genomes]
rs73421911	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421916	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421994	1.00[AMR][1000 genomes]
rs73423614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73732941	1.00[AMR][1000 genomes]
rs7740399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759469	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768639	1.00[AMR][1000 genomes]
rs7773185	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773273	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37226400-37244000	Weak transcription	Gastric	stomach
2	chr6:37226400-37247200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:37226400-37250400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37226600-37232600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:37226600-37234400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:37226600-37237000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:37226600-37237400	Weak transcription	Placenta	Placenta
8	chr6:37226600-37237400	Weak transcription	HSMM	muscle
9	chr6:37226600-37240200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:37226600-37240200	Weak transcription	Aorta	Aorta
11	chr6:37226600-37243000	Weak transcription	Pancreas	Pancrea
12	chr6:37226600-37247200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:37226600-37247200	Weak transcription	Esophagus	oesophagus
14	chr6:37226600-37250000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:37226600-37259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:37226800-37237400	Weak transcription	NHDF-Ad	bronchial
17	chr6:37226800-37247000	Weak transcription	HSMMtube	muscle
18	chr6:37227000-37236800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:37227000-37237000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:37227000-37247200	Weak transcription	Right Atrium	heart
21	chr6:37227000-37250000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:37227200-37232400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:37227200-37237200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:37227200-37237400	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:37227200-37238400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:37227200-37241400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:37227200-37247200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:37227200-37247200	Weak transcription	Brain Substantia Nigra	brain
29	chr6:37227200-37247200	Weak transcription	NHLF	lung
30	chr6:37227200-37250200	Weak transcription	Brain Angular Gyrus	brain
31	chr6:37227400-37232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:37227400-37232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:37227400-37232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:37227400-37234200	Weak transcription	Fetal Stomach	stomach
35	chr6:37227400-37234400	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:37227400-37235600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:37227400-37235800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:37227400-37236000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:37227400-37236600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:37227400-37237000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:37227400-37237000	Weak transcription	Osteobl	bone
42	chr6:37227400-37237200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:37227400-37237400	Weak transcription	NH-A	brain
44	chr6:37227400-37237600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:37227400-37238400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:37227400-37238400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:37227400-37238400	Weak transcription	A549	lung
48	chr6:37227400-37239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:37227400-37240200	Weak transcription	Psoas Muscle	Psoas
50	chr6:37227400-37240400	Weak transcription	Brain Anterior Caudate	brain

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