Variant report

Variant	rs9470472
Chromosome Location	chr6:37069025-37069026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37068856..37071851-chr6:37091026..37093597,3	K562	blood:
2	chr6:37068687..37073777-chr6:37134498..37141363,15	MCF-7	breast:
3	chr6:37064155..37066173-chr6:37067263..37069048,2	K562	blood:
4	chr6:36952310..36955171-chr6:37067578..37069187,2	K562	blood:
5	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
6	chr6:37068352..37070883-chr6:37071003..37073055,2	MCF-7	breast:
7	chr6:37068309..37074081-chr6:37136012..37144014,7	K562	blood:
8	chr6:37038083..37040728-chr6:37067671..37070819,3	MCF-7	breast:
9	chr6:37060206..37065655-chr6:37067548..37072519,8	K562	blood:
10	chr6:37021501..37023622-chr6:37068699..37070344,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11548070	1.00[TSI][hapmap]
rs11548576	1.00[CHB][hapmap]
rs11755152	1.00[CHB][hapmap]
rs11970265	1.00[TSI][hapmap]
rs11970283	1.00[ASN][1000 genomes]
rs1618812	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs16889318	1.00[CHB][hapmap]
rs16889330	1.00[CHB][hapmap]
rs16889467	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183000	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395665	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395666	1.00[CHB][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994992	1.00[ASN][1000 genomes]
rs58083075	1.00[ASN][1000 genomes]
rs58663807	1.00[ASN][1000 genomes]
rs59214897	1.00[ASN][1000 genomes]
rs60679206	1.00[ASN][1000 genomes]
rs6908216	1.00[TSI][hapmap]
rs7753853	1.00[TSI][hapmap]
rs7757939	1.00[CHB][hapmap]
rs7773273	1.00[TSI][hapmap]
rs9462253	1.00[ASN][1000 genomes]
rs9462260	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9462262	1.00[ASN][1000 genomes]
rs9470455	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9470466	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9470468	1.00[ASN][1000 genomes]
rs9470471	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470473	1.00[ASN][1000 genomes]
rs9470474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918399	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
2	chr6:37052800-37069800	Weak transcription	Ovary	ovary
3	chr6:37061400-37069600	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:37061400-37070000	Weak transcription	Pancreas	Pancrea
5	chr6:37061800-37069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:37061800-37069800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37062400-37069600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:37062400-37069600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:37062400-37069800	Weak transcription	NHEK	skin
10	chr6:37062600-37069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:37062800-37069800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:37063000-37069800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:37063200-37070000	Weak transcription	Esophagus	oesophagus
14	chr6:37063400-37069800	Weak transcription	Stomach Mucosa	stomach
15	chr6:37063600-37071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:37064000-37069600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:37064200-37070000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:37064200-37071200	Weak transcription	Small Intestine	intestine
19	chr6:37064400-37069800	Weak transcription	Brain Substantia Nigra	brain
20	chr6:37064400-37070000	Weak transcription	Psoas Muscle	Psoas
21	chr6:37064800-37069800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:37064800-37069800	Weak transcription	Brain Anterior Caudate	brain
23	chr6:37066600-37069800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:37066600-37069800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:37066800-37070000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:37066800-37070000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:37067400-37069800	Weak transcription	Adipose Nuclei	Adipose
28	chr6:37067600-37069600	Weak transcription	Hela-S3	cervix
29	chr6:37067600-37069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:37067600-37070000	Weak transcription	HMEC	breast
31	chr6:37067800-37070000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:37068000-37069200	Weak transcription	Placenta	Placenta
33	chr6:37068000-37069600	Weak transcription	Liver	Liver
34	chr6:37068400-37070000	Enhancers	Primary B cells from peripheral blood	blood
35	chr6:37068600-37069800	Enhancers	Primary B cells from cord blood	blood
36	chr6:37068600-37069800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:37068600-37070000	Enhancers	Fetal Muscle Leg	muscle
38	chr6:37068600-37070200	Enhancers	GM12878-XiMat	blood
39	chr6:37068800-37069600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:37068800-37069800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr6:37068800-37069800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:37068800-37069800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:37068800-37069800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr6:37068800-37069800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:37068800-37069800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:37068800-37069800	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr6:37068800-37069800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:37068800-37069800	Flanking Active TSS	HepG2	liver
49	chr6:37068800-37070000	Enhancers	Duodenum Mucosa	Duodenum
50	chr6:37068800-37070000	Enhancers	Fetal Intestine Large	intestine

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