Variant report

Variant	rs9470471
Chromosome Location	chr6:37068688-37068689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37068687..37073777-chr6:37134498..37141363,15	MCF-7	breast:
2	chr6:37064155..37066173-chr6:37067263..37069048,2	K562	blood:
3	chr6:36952310..36955171-chr6:37067578..37069187,2	K562	blood:
4	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
5	chr6:37068352..37070883-chr6:37071003..37073055,2	MCF-7	breast:
6	chr6:37068309..37074081-chr6:37136012..37144014,7	K562	blood:
7	chr6:37038083..37040728-chr6:37067671..37070819,3	MCF-7	breast:
8	chr6:37060206..37065655-chr6:37067548..37072519,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11970283	1.00[ASN][1000 genomes]
rs16889467	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395665	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994992	1.00[ASN][1000 genomes]
rs58083075	1.00[ASN][1000 genomes]
rs58663807	1.00[ASN][1000 genomes]
rs59214897	1.00[ASN][1000 genomes]
rs60679206	1.00[ASN][1000 genomes]
rs9462253	1.00[ASN][1000 genomes]
rs9462260	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9462262	1.00[ASN][1000 genomes]
rs9470455	1.00[ASN][1000 genomes]
rs9470466	1.00[ASN][1000 genomes]
rs9470468	1.00[ASN][1000 genomes]
rs9470472	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470473	1.00[ASN][1000 genomes]
rs9470474	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
2	chr6:37052800-37069800	Weak transcription	Ovary	ovary
3	chr6:37058000-37069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37061400-37069000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37061400-37069600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:37061400-37070000	Weak transcription	Pancreas	Pancrea
7	chr6:37061600-37068800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:37061800-37068800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:37061800-37069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:37061800-37069800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:37062400-37069600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:37062400-37069600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:37062400-37069800	Weak transcription	NHEK	skin
14	chr6:37062600-37069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:37062800-37069800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:37063000-37069800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:37063200-37070000	Weak transcription	Esophagus	oesophagus
18	chr6:37063400-37069800	Weak transcription	Stomach Mucosa	stomach
19	chr6:37063600-37068800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:37063600-37071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:37064000-37069600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:37064200-37068800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:37064200-37068800	Weak transcription	K562	blood
24	chr6:37064200-37069000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:37064200-37070000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:37064200-37071200	Weak transcription	Small Intestine	intestine
27	chr6:37064400-37069800	Weak transcription	Brain Substantia Nigra	brain
28	chr6:37064400-37070000	Weak transcription	Psoas Muscle	Psoas
29	chr6:37064600-37068800	Weak transcription	Fetal Intestine Large	intestine
30	chr6:37064600-37068800	Weak transcription	Fetal Intestine Small	intestine
31	chr6:37064800-37068800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:37064800-37069800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:37064800-37069800	Weak transcription	Brain Anterior Caudate	brain
34	chr6:37066600-37069800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:37066600-37069800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:37066800-37070000	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:37066800-37070000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:37067400-37069800	Weak transcription	Adipose Nuclei	Adipose
39	chr6:37067600-37069000	Weak transcription	Spleen	Spleen
40	chr6:37067600-37069000	Weak transcription	A549	lung
41	chr6:37067600-37069600	Weak transcription	Hela-S3	cervix
42	chr6:37067600-37069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:37067600-37070000	Weak transcription	HMEC	breast
44	chr6:37067800-37070000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:37068000-37069200	Weak transcription	Placenta	Placenta
46	chr6:37068000-37069600	Weak transcription	Liver	Liver
47	chr6:37068400-37070000	Enhancers	Primary B cells from peripheral blood	blood
48	chr6:37068600-37068800	Enhancers	HepG2	liver
49	chr6:37068600-37069800	Enhancers	Primary B cells from cord blood	blood
50	chr6:37068600-37069800	Enhancers	Skeletal Muscle Female	skeletal muscle

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