Variant report

Variant	rs9470455
Chromosome Location	chr6:36987483-36987484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:36985940-36987551	Hela-S3	cervix:	n/a	n/a
2	ZNF143	chr6:36987465-36987556	H1-hESC	embryonic stem cell:	n/a	n/a
3	ZNF143	chr6:36987475-36987584	GM12878	blood:	n/a	n/a
4	MAX	chr6:36986771-36987531	MCF-7	breast:	n/a	n/a
5	RAD21	chr6:36984773-36987677	SK-N-SH	brain:	n/a	chr6:36986113-36986132 chr6:36985544-36985557 chr6:36985604-36985617
6	CTCF	chr6:36985556-36987592	HCT-116	colon:	n/a	chr6:36986115-36986133
7	RCOR1	chr6:36987306-36987592	K562	blood:	n/a	n/a
8	CTCF	chr6:36985245-36987544	SK-N-SH	brain:	n/a	chr6:36986115-36986133
9	ZNF143	chr6:36987347-36987615	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36985829..36988521-chr6:36988646..36990558,2	K562	blood:
2	chr6:36987000..36988996-chr6:36992167..36994325,2	MCF-7	breast:
3	chr6:36831717..36834035-chr6:36985083..36987828,2	K562	blood:
4	chr6:36984774..36987733-chr6:36993476..36997065,5	K562	blood:
5	chr6:36851998..36854194-chr6:36984664..36987550,2	K562	blood:
6	chr6:36947258..36950041-chr6:36986048..36987573,2	MCF-7	breast:
7	chr6:36985904..36987716-chr6:37141908..37143451,2	MCF-7	breast:
8	chr6:36928588..36930558-chr6:36986253..36988587,2	K562	blood:
9	chr6:36852005..36855458-chr6:36984429..36987560,3	K562	blood:
10	chr6:36985845..36988567-chr6:37138212..37140631,3	K562	blood:
11	chr6:36951647..36954567-chr6:36984468..36987638,6	K562	blood:
12	chr6:36980695..36984451-chr6:36985282..36988423,5	K562	blood:
13	chr6:36986111..36987939-chr6:37176127..37178450,2	MCF-7	breast:

No data

Variant related genes	Relation type
FGD2	TF binding region
ENSG00000137193	Chromatin interaction
ENSG00000198663	Chromatin interaction
ENSG00000137409	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11548576	1.00[CHB][hapmap]
rs11755152	1.00[CHB][hapmap]
rs11970283	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1618812	1.00[CHB][hapmap]
rs16889318	1.00[CHB][hapmap]
rs16889330	1.00[CHB][hapmap]
rs16889467	1.00[ASN][1000 genomes]
rs2183000	1.00[ASN][1000 genomes]
rs2395665	1.00[ASN][1000 genomes]
rs2395666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55994992	1.00[ASN][1000 genomes]
rs58083075	1.00[ASN][1000 genomes]
rs58663807	1.00[ASN][1000 genomes]
rs59214897	1.00[ASN][1000 genomes]
rs60679206	1.00[ASN][1000 genomes]
rs7757939	1.00[CHB][hapmap]
rs9462253	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9462260	1.00[ASN][1000 genomes]
rs9462262	1.00[ASN][1000 genomes]
rs9462272	1.00[AMR][1000 genomes]
rs9462279	1.00[AMR][1000 genomes]
rs9470453	1.00[AMR][1000 genomes]
rs9470466	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9470468	1.00[ASN][1000 genomes]
rs9470471	1.00[ASN][1000 genomes]
rs9470472	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9470473	1.00[ASN][1000 genomes]
rs9470474	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv885816	chr6:36965099-36999682	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv515488	chr6:36978745-36989587	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	esv3436059	chr6:36986674-36990872	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36975400-36988600	Weak transcription	Gastric	stomach
2	chr6:36975600-36988200	Weak transcription	Esophagus	oesophagus
3	chr6:36975600-36989600	Weak transcription	Thymus	Thymus
4	chr6:36983400-36995000	Weak transcription	Lung	lung
5	chr6:36984800-36989000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:36985200-36988200	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr6:36985400-36987600	Enhancers	Brain Germinal Matrix	brain
8	chr6:36985600-36987600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:36985600-36987600	Enhancers	HMEC	breast
10	chr6:36985600-36988800	Enhancers	Fetal Heart	heart
11	chr6:36985800-36988200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:36985800-36988200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:36986000-36989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:36986000-36989600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:36986200-36987600	Enhancers	Liver	Liver
16	chr6:36986200-36989000	Enhancers	Pancreas	Pancrea
17	chr6:36986400-36987600	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:36986400-36987600	Enhancers	Dnd41	blood
19	chr6:36986400-36988200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:36986400-36988600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:36986400-36989400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:36986400-36989400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:36986400-36989400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:36986400-36989600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:36986400-36990000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:36986600-36989600	Weak transcription	HSMM	muscle
27	chr6:36986600-36989600	Weak transcription	HUVEC	blood vessel
28	chr6:36986600-36991000	Weak transcription	Stomach Mucosa	stomach
29	chr6:36986600-36992600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:36986800-37006600	Weak transcription	Colonic Mucosa	Colon
31	chr6:36987000-36988000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:36987000-36990200	Weak transcription	Adipose Nuclei	Adipose
33	chr6:36987000-36991200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:36987000-36991800	Strong transcription	GM12878-XiMat	blood
35	chr6:36987000-36993200	Weak transcription	Placenta	Placenta
36	chr6:36987000-36996800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr6:36987000-36996800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:36987200-36988200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:36987200-36988200	Weak transcription	K562	blood
40	chr6:36987200-36989200	Weak transcription	Primary T cells from cord blood	blood
41	chr6:36987200-36989200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:36987200-36989200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:36987200-36989200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:36987200-36989200	Weak transcription	Fetal Thymus	thymus
45	chr6:36987200-36989400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr6:36987200-36989400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:36987200-36989400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:36987200-36989400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:36987200-36989400	Weak transcription	A549	lung
50	chr6:36987200-36989600	Weak transcription	NH-A	brain

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