Variant report

Variant	rs16889318
Chromosome Location	chr6:36931364-36931365
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36930815..36932327-chr6:37373552..37376539,2	K562	blood:
3	chr6:36929829..36933522-chr6:36953197..36956380,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11548576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11755152	1.00[CHB][hapmap]
rs1618812	1.00[CHB][hapmap]
rs16889095	1.00[CHB][hapmap]
rs16889330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16889344	1.00[JPT][hapmap]
rs16889347	1.00[JPT][hapmap]
rs16889349	1.00[JPT][hapmap]
rs171032	1.00[CHB][hapmap]
rs236417	1.00[CHB][hapmap]
rs236418	1.00[CHB][hapmap]
rs2395666	1.00[CHB][hapmap]
rs3997729	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs58012316	0.84[AFR][1000 genomes]
rs708006	1.00[JPT][hapmap]
rs73422769	0.82[AFR][1000 genomes]
rs73422776	0.82[AFR][1000 genomes]
rs73422781	0.82[AFR][1000 genomes]
rs7757939	1.00[CHB][hapmap]
rs9296205	1.00[JPT][hapmap]
rs9470455	1.00[CHB][hapmap]
rs9470466	1.00[CHB][hapmap]
rs9470472	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36927000-36931600	Weak transcription	Lung	lung
2	chr6:36927200-36931600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:36927200-36933400	Enhancers	Stomach Mucosa	stomach
4	chr6:36927800-36933200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:36928000-36933600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:36928200-36935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:36928600-36935000	Weak transcription	HSMMtube	muscle
8	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
9	chr6:36928800-36934000	Weak transcription	HSMM	muscle
10	chr6:36928800-36935000	Weak transcription	HUVEC	blood vessel
11	chr6:36929000-36934200	Weak transcription	Osteobl	bone
12	chr6:36929000-36934400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:36929000-36934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:36929000-36935200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:36929000-36935400	Weak transcription	Ovary	ovary
16	chr6:36929000-36935400	Weak transcription	A549	lung
17	chr6:36929200-36931400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:36929200-36931400	Enhancers	Spleen	Spleen
19	chr6:36929200-36931800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:36929200-36934600	Weak transcription	NH-A	brain
21	chr6:36929400-36934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:36929400-36935200	Weak transcription	K562	blood
23	chr6:36929600-36932000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:36929600-36932200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
26	chr6:36929800-36933200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:36930000-36933000	Enhancers	Primary B cells from cord blood	blood
28	chr6:36930400-36931400	Flanking Active TSS	Fetal Thymus	thymus
29	chr6:36930400-36931800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:36930400-36933000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:36930400-36933200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:36930600-36931400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:36930600-36931400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:36930600-36931400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr6:36930600-36931400	Enhancers	Fetal Brain Female	brain
36	chr6:36930600-36931600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:36930600-36931600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:36930600-36931600	Flanking Active TSS	Thymus	Thymus
39	chr6:36930600-36932000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:36930600-36932000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:36930600-36932200	Enhancers	GM12878-XiMat	blood
42	chr6:36930600-36932400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:36930600-36932400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:36930600-36933000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:36930600-36933000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:36930600-36933000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:36930600-36933000	Enhancers	Dnd41	blood
48	chr6:36930600-36933200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:36930600-36933200	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr6:36930600-36933200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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