Variant report

Variant	rs236418
Chromosome Location	chr6:36746581-36746582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36560838..36563428-chr6:36745016..36747444,2	K562	blood:
2	chr6:36746496..36750721-chr6:36752225..36755570,6	K562	blood:
3	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:
4	chr6:36744515..36747329-chr6:36748671..36750646,2	K562	blood:
5	chr6:36744831..36747050-chr6:36751447..36753200,2	MCF-7	breast:
6	chr6:36743512..36745490-chr6:36745545..36747211,2	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11548576	1.00[CHB][hapmap]
rs16889095	1.00[CHB][hapmap]
rs16889318	1.00[CHB][hapmap]
rs16889330	1.00[CHB][hapmap]
rs171032	1.00[CHB][hapmap]
rs236415	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs236417	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
3	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
4	chr6:36738600-36746800	Weak transcription	Right Ventricle	heart
5	chr6:36740400-36751200	Enhancers	Dnd41	blood
6	chr6:36740600-36748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:36744400-36747200	Enhancers	Brain Anterior Caudate	brain
8	chr6:36744600-36746600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36744600-36747200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr6:36744800-36746600	Enhancers	Fetal Muscle Leg	muscle
11	chr6:36744800-36746600	Bivalent Enhancer	Fetal Stomach	stomach
12	chr6:36744800-36746800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:36744800-36746800	Enhancers	Brain Germinal Matrix	brain
14	chr6:36745000-36746600	Enhancers	Brain Angular Gyrus	brain
15	chr6:36745200-36746600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:36745200-36747000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:36745200-36748000	Weak transcription	Fetal Intestine Small	intestine
18	chr6:36745400-36748200	Weak transcription	Fetal Thymus	thymus
19	chr6:36745400-36748600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:36745600-36746600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:36745800-36746600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:36745800-36747800	Weak transcription	Primary B cells from cord blood	blood
23	chr6:36745800-36748200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:36746000-36746600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:36746000-36746600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:36746000-36746800	Weak transcription	Spleen	Spleen
27	chr6:36746000-36748000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:36746000-36750400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
30	chr6:36746200-36748000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:36746400-36748200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:36746400-36748200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:36746400-36748800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:36746400-36749200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:36746400-36749800	Enhancers	Pancreas	Pancrea

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