Variant report

Variant	rs236417
Chromosome Location	chr6:36747494-36747495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36746496..36750721-chr6:36752225..36755570,6	K562	blood:
2	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:
3	chr6:36746898..36749135-chr6:36816606..36818141,2	MCF-7	breast:
4	chr6:36741234..36745111-chr6:36747251..36750668,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11548576	1.00[CHB][hapmap]
rs16889095	1.00[CHB][hapmap]
rs16889318	1.00[CHB][hapmap]
rs16889330	1.00[CHB][hapmap]
rs171032	1.00[CHB][hapmap]
rs236415	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs236418	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
3	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
4	chr6:36740400-36751200	Enhancers	Dnd41	blood
5	chr6:36740600-36748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:36745200-36748000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:36745400-36748200	Weak transcription	Fetal Thymus	thymus
8	chr6:36745400-36748600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:36745800-36747800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:36745800-36748200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:36746000-36748000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:36746000-36750400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
14	chr6:36746200-36748000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:36746400-36748200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:36746400-36748200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:36746400-36748800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:36746400-36749200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:36746400-36749800	Enhancers	Pancreas	Pancrea
20	chr6:36746600-36748200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:36746600-36754000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:36746600-36754000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:36746600-36756400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:36746800-36749400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:36747000-36751800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:36747000-36755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:36747200-36747600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr6:36747200-36749800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:36747200-36756200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:36747400-36747600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:36747400-36751000	Enhancers	Primary B cells from peripheral blood	blood

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