Variant report

Variant	rs236415
Chromosome Location	chr6:36748247-36748248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36746496..36750721-chr6:36752225..36755570,6	K562	blood:
2	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:
3	chr6:36746898..36749135-chr6:36816606..36818141,2	MCF-7	breast:
4	chr6:36741234..36745111-chr6:36747251..36750668,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs236417	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs236418	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
2	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
3	chr6:36740400-36751200	Enhancers	Dnd41	blood
4	chr6:36740600-36748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:36745400-36748600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:36746000-36750400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
8	chr6:36746400-36748800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:36746400-36749200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:36746400-36749800	Enhancers	Pancreas	Pancrea
11	chr6:36746600-36754000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:36746600-36754000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:36746600-36756400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:36746800-36749400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:36747000-36751800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:36747000-36755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:36747200-36749800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:36747200-36756200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:36747400-36751000	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:36747800-36748600	Enhancers	Primary B cells from cord blood	blood
21	chr6:36748000-36748400	Enhancers	Gastric	stomach
22	chr6:36748000-36748600	Enhancers	Stomach Mucosa	stomach
23	chr6:36748000-36748600	Flanking Bivalent TSS/Enh	HepG2	liver
24	chr6:36748000-36749200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:36748000-36749400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:36748000-36749800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:36748000-36749800	Enhancers	Fetal Intestine Large	intestine
28	chr6:36748000-36750000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:36748000-36750200	Enhancers	Fetal Intestine Small	intestine
30	chr6:36748000-36750800	Enhancers	GM12878-XiMat	blood
31	chr6:36748200-36748400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:36748200-36748400	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr6:36748200-36748400	Enhancers	Fetal Muscle Leg	muscle
34	chr6:36748200-36748400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:36748200-36748600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr6:36748200-36748600	Enhancers	Colonic Mucosa	Colon
37	chr6:36748200-36748600	Enhancers	Fetal Kidney	kidney
38	chr6:36748200-36748600	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:36748200-36748600	Bivalent Enhancer	K562	blood
40	chr6:36748200-36748800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr6:36748200-36749000	Enhancers	HMEC	breast
42	chr6:36748200-36749200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:36748200-36749200	Enhancers	NHEK	skin
44	chr6:36748200-36749400	Enhancers	Fetal Thymus	thymus
45	chr6:36748200-36749400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr6:36748200-36749800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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