Variant report

Variant	rs59214897
Chromosome Location	chr6:37090503-37090504
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37088088..37090801-chr6:37092743..37094400,2	MCF-7	breast:
2	chr6:37089839..37093483-chr6:37096166..37098132,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11970283	1.00[ASN][1000 genomes]
rs16889467	1.00[ASN][1000 genomes]
rs2183000	1.00[ASN][1000 genomes]
rs2395665	1.00[ASN][1000 genomes]
rs2395666	1.00[ASN][1000 genomes]
rs55994992	1.00[ASN][1000 genomes]
rs58083075	1.00[ASN][1000 genomes]
rs58663807	1.00[ASN][1000 genomes]
rs60679206	1.00[ASN][1000 genomes]
rs9462253	1.00[ASN][1000 genomes]
rs9462260	1.00[ASN][1000 genomes]
rs9462262	1.00[ASN][1000 genomes]
rs9470455	1.00[ASN][1000 genomes]
rs9470466	1.00[ASN][1000 genomes]
rs9470468	1.00[ASN][1000 genomes]
rs9470471	1.00[ASN][1000 genomes]
rs9470472	1.00[ASN][1000 genomes]
rs9470473	1.00[ASN][1000 genomes]
rs9470474	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37073600-37090600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:37075200-37091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:37079000-37092400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:37079200-37092600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:37083400-37090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:37084600-37093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:37084800-37091200	Weak transcription	K562	blood
8	chr6:37084800-37093400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:37085400-37090800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:37085400-37092000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:37087000-37093600	Enhancers	HepG2	liver
12	chr6:37088000-37090800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:37088000-37090800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:37088000-37091000	Weak transcription	Placenta	Placenta
15	chr6:37088000-37093400	Weak transcription	Hela-S3	cervix
16	chr6:37089600-37090600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:37089600-37091000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:37089600-37091000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:37089600-37092400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:37089800-37090600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:37089800-37090600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:37089800-37093000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:37090400-37090800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:37090400-37091000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:37090400-37091200	Enhancers	NHDF-Ad	bronchial
26	chr6:37090400-37091400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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